CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03388
KXG22553

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	EES03388	AT4G22220.1	21798944
AT1G50420.1	KXG22553	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	71.78	74.89
HORVU2Hr1G113480.1	Barley	cytosol	30.71	46.98
HORVU2Hr1G113490.1	Barley	cytosol	30.71	46.98
OQU77884	Sorghum	plasma membrane	44.19	46.81
TraesCS2D01G534700.1	Wheat	cytosol	30.29	46.5
TraesCS6D01G055100.1	Wheat	cytosol	29.88	45.86
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	27.59	42.63
TraesCS2A01G532900.1	Wheat	cytosol	36.72	41.16
HORVU2Hr1G113360.1	Barley	cytosol	37.97	38.53
TraesCS2B01G562400.1	Wheat	cytosol	37.14	37.76
TraesCSU01G014000.1	Wheat	cytosol	21.58	35.37
EES02045	Sorghum	cytosol, plastid	33.61	35.29
CDY68881	Canola	cytosol	17.43	34.43
GSMUA_Achr8P09690_001	Banana	cytosol	31.12	33.63
CDY45059	Canola	cytosol	21.16	33.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	30.91	31.5
Bra018848.1-P	Field mustard	cytosol	27.8	30.45
CDY22795	Canola	cytosol, plastid	27.8	30.18
Bra014251.1-P	Field mustard	cytosol	27.59	29.89
Solyc12g099900.1.1	Tomato	nucleus	28.63	29.49
CDY03601	Canola	cytosol	27.39	29.4
PGSC0003DMT400011839	Potato	cytosol	28.42	29.27
Solyc01g008910.2.1	Tomato	cytosol	28.84	29.2
PGSC0003DMT400058477	Potato	cytosol	28.42	29.03
KRH24106	Soybean	cytosol, nucleus, peroxisome	27.18	28.79
KRH29080	Soybean	cytosol	27.18	28.79
Os05t0378200-00	Rice	cytosol	32.57	28.49
OQU87235	Sorghum	extracellular	17.43	28.47
VIT_13s0019g01220.t01	Wine grape	cytosol	28.22	28.45
AT1G50420.1	Thale cress	cytosol	28.22	28.22
VIT_06s0009g02390.t01	Wine grape	cytosol	27.59	28.06
KRH29971	Soybean	cytosol	25.73	28.05
EES09233	Sorghum	cytosol	28.22	27.93
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	26.56	27.53
KRH62871	Soybean	cytosol	24.9	27.09
EES16518	Sorghum	cytosol	25.1	26.89
OQU83473	Sorghum	cytosol	23.24	26.54
KRH27822	Soybean	nucleus, plastid	25.93	26.43
KXG29713	Sorghum	cytosol	20.33	24.69
KXG22822	Sorghum	mitochondrion	29.25	24.44
EES01920	Sorghum	cytosol	25.31	22.72
KXG36498	Sorghum	cytosol, plastid	20.75	21.74
OQU76691	Sorghum	cytosol, extracellular	20.12	20.73
EES18409	Sorghum	cytosol	20.95	20.49
KXG23987	Sorghum	cytosol	21.78	20.0
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	22.61	19.5
KXG22896	Sorghum	cytosol, plasma membrane	21.16	19.35
EER93592	Sorghum	cytosol	23.44	18.02
EER87757	Sorghum	mitochondrion	23.65	17.9
OQU81603	Sorghum	cytosol	13.28	17.88
OQU82754	Sorghum	plastid	22.61	15.33
CDY37137	Canola	plastid	27.59	13.94
GSMUA_Achr11P...	Banana	cytosol	30.29	13.25

Protein Annotations

EnsemblPlants:OQU77885	EnsemblPlantsGene:SORBI_3009G117800	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF123	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU77885	ProteinID:OQU77885.1	SEG:seg
UniParc:UPI000B42546C	UniProt:A0A1Z5R369	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46298990..46302547

Molecular Weight (calculated)

52172.4 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.132

Length

482 amino acids

Sequence
(BLAST)

001: MAPGNLDNKG KGKAVLNDDD DISAPTMPVE AIGSSGGQPA RSSAQAIPPA AAMAAPPLIH RGSQSQQLDK SLIVLIKCVM QQCVTGMEAA NTEAANSALV
101: ALSSASSLDG DPIQRLTSAF AEALARRALA LLQGLSWSVQ GQLRTPPSPA YAGVARQWFH SLNPLLRGAS LAANHGIVRA VEGEQVVHVV DLGGANPRQW
201: IELLRLLAGR PGGAPSSLRL TIVSEHAFFL SCATELLTAE AARLHLSLAV HTVQAHIDNF SATVLASLGV QRGPALVLSS TLQLHRLIAD TAVVRHADRE
301: HETMTRADVL LRLLRDLSPK VLVLTEQEAD HNNGEGRGAG ALWDRVNNAF DYYAVLFNEL EVSGVPRGSL DRAVVERLHL REEIMDIVAR DGAARRERHE
401: KMQRWVPRMA AAGFQPVPVT MDGFREATRL DRRRSTSDAD RQRPLYRVTA VKEMGCFYVH SCSAPMFSVS FWQPAPPRDD QQ

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.