Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400035008 | |
| PGSC0003DMT400046740 | |
| PGSC0003DMT400078947 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | PGSC0003DMT400035008 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | PGSC0003DMT400046740 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | PGSC0003DMT400078947 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g008910.2.1 | Tomato | cytosol | 95.76 | 94.96 |
| PGSC0003DMT400011839 | Potato | cytosol | 83.47 | 84.19 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 74.15 | 73.84 |
| KRH29080 | Soybean | cytosol | 69.28 | 71.87 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 69.07 | 71.65 |
| CDY45059 | Canola | cytosol | 45.55 | 70.72 |
| CDY68881 | Canola | cytosol | 36.44 | 70.49 |
| Bra014251.1-P | Field mustard | cytosol | 63.56 | 67.42 |
| Bra018848.1-P | Field mustard | cytosol | 62.5 | 67.05 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 65.68 | 66.67 |
| KRH27822 | Soybean | nucleus, plastid | 66.53 | 66.38 |
| CDY03601 | Canola | cytosol | 63.14 | 66.37 |
| CDY22795 | Canola | cytosol, plastid | 62.08 | 65.99 |
| AT1G50420.1 | Thale cress | cytosol | 66.95 | 65.56 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 23.73 | 62.57 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 57.2 | 60.54 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 58.05 | 57.93 |
| Os01t0948200-00 | Rice | cytosol | 51.27 | 54.75 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 51.27 | 54.14 |
| Zm00001d042127_P001 | Maize | plastid | 50.42 | 53.24 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 51.06 | 53.2 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 51.06 | 52.97 |
| Zm00001d011881_P001 | Maize | cytosol | 50.21 | 52.78 |
| EES02045 | Sorghum | cytosol, plastid | 50.85 | 52.29 |
| Os06t0211500-00 | Rice | cytosol | 19.07 | 47.12 |
| PGSC0003DMT400052191 | Potato | cytosol | 31.14 | 39.2 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 25.42 | 38.1 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 25.42 | 38.1 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 25.21 | 37.9 |
| Os12t0138100-00 | Rice | cytosol | 39.19 | 37.6 |
| Os11t0141500-00 | Rice | cytosol | 39.19 | 37.6 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 24.58 | 36.94 |
| Zm00001d023248_P001 | Maize | cytosol | 39.41 | 36.76 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 32.42 | 35.58 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 23.31 | 35.26 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 40.68 | 34.78 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 40.47 | 34.73 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 40.47 | 34.41 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 10.59 | 34.25 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 40.47 | 34.17 |
| EES16518 | Sorghum | cytosol | 31.78 | 33.33 |
| PGSC0003DMT400030652 | Potato | cytosol | 28.81 | 33.09 |
| KXG22822 | Sorghum | mitochondrion | 39.41 | 32.24 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 31.99 | 31.79 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 31.14 | 31.01 |
| Os12t0138200-00 | Rice | cytosol | 33.47 | 30.98 |
| Zm00001d052463_P001 | Maize | cytosol | 34.32 | 30.98 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 29.24 | 30.94 |
| Os11t0141700-00 | Rice | cytosol | 33.05 | 30.83 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 29.03 | 30.72 |
| CDY37137 | Canola | plastid | 61.86 | 30.61 |
| EES09233 | Sorghum | cytosol | 31.57 | 30.6 |
| OQU77884 | Sorghum | plasma membrane | 28.81 | 29.89 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 30.72 | 29.77 |
| TraesCSU01G014000.1 | Wheat | cytosol | 18.43 | 29.59 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 28.6 | 29.22 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 29.24 | 29.05 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 26.48 | 29.0 |
| PGSC0003DMT400023877 | Potato | cytosol | 25.0 | 28.64 |
| OQU77885 | Sorghum | cytosol | 29.03 | 28.42 |
| PGSC0003DMT400039455 | Potato | cytosol | 30.3 | 26.83 |
| PGSC0003DMT400087504 | Potato | nucleus | 25.85 | 25.1 |
| Zm00001d023247_P001 | Maize | plastid | 29.45 | 24.82 |
| Os05t0378200-00 | Rice | cytosol | 28.39 | 24.32 |
| PGSC0003DMT400049448 | Potato | nucleus | 26.27 | 24.31 |
| PGSC0003DMT400040589 | Potato | nucleus | 30.08 | 24.15 |
| GSMUA_Achr11P... | Banana | cytosol | 55.93 | 23.96 |
| Os05t0378500-00 | Rice | plastid | 27.54 | 23.21 |
| PGSC0003DMT400007879 | Potato | plastid | 29.66 | 20.62 |
| PGSC0003DMT400038574 | Potato | cytosol | 25.21 | 19.48 |
| PGSC0003DMT400049445 | Potato | cytosol | 15.89 | 17.81 |
| PGSC0003DMT400043358 | Potato | cytosol | 30.93 | 17.68 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.48 | 1.98 |
| Os11t0141550-01 | Rice | cytosol | 0.21 | 0.78 |
Protein Annotations
| EntrezGene:102605596 | MapMan:15.5.12 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | UniProt:M1C2Q4 |
| PFAM:PF03514 | EnsemblPlantsGene:PGSC0003DMG400022709 | PGSC:PGSC0003DMG400022709 | EnsemblPlants:PGSC0003DMT400058477 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI0002961710 | RefSeq:XP_006362746.1 | SEG:seg |
Description
GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022709]
Coordinates
chr1:+:5317971..5320421
Molecular Weight (calculated)
53226.9 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.243
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQDDGSSSV TSSSPLQNFP MMSLSPNFGG SPYQWLKDLK SEDRGLYLIH LLLTCANHVA IGNLENANIA LDQISHLASP NGDTMQRIAS YFAESLADRI
101: LRSWNGIYKA LNSTKLRVVS EDILVKKMFF EYFPFLKVAS VIANQAIIEA MEGEKMVHIV DLNASEPLQW RALLQDLSAR PEGPPHLRIT GVHQQKQVLE
201: QIAHVLTEEA EKLDIPFQFH QVVSKLENLD IEKLRVKTGE ALAISSVMQL HTLLAHDDEP QKKSPLGFKH LNGLHLQRAI LNQNTLGDLL EKETTTNVFS
301: PGNESASSSP LSSTASTKMD GFLHALWGLS PKVMVVTEQD SNHNGTTLME RLSESLYFYA ALFDCLEFTL QRTSLERLKV EKMLFGEEIK NIVACEGGER
401: KERHEKLDKW FQRFDGAGFA NVPLSYYAML QARRLLQSYS CEGYKIKEEN GSVVICWHDR ALFAVSAWRC RR
101: LRSWNGIYKA LNSTKLRVVS EDILVKKMFF EYFPFLKVAS VIANQAIIEA MEGEKMVHIV DLNASEPLQW RALLQDLSAR PEGPPHLRIT GVHQQKQVLE
201: QIAHVLTEEA EKLDIPFQFH QVVSKLENLD IEKLRVKTGE ALAISSVMQL HTLLAHDDEP QKKSPLGFKH LNGLHLQRAI LNQNTLGDLL EKETTTNVFS
301: PGNESASSSP LSSTASTKMD GFLHALWGLS PKVMVVTEQD SNHNGTTLME RLSESLYFYA ALFDCLEFTL QRTSLERLKV EKMLFGEEIK NIVACEGGER
401: KERHEKLDKW FQRFDGAGFA NVPLSYYAML QARRLLQSYS CEGYKIKEEN GSVVICWHDR ALFAVSAWRC RR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.