Factsheet for Os05t0378500-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0662600-02
Os05t0568100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Os01t0662600-02	AT4G22220.1	21798944
AT1G50420.1	Os05t0568100-01	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0948200-00	Rice	cytosol	28.75	36.43
GSMUA_Achr8P09690_001	Banana	cytosol	25.54	32.06
Os05t0378200-00	Rice	cytosol	30.18	30.67
CDY68881	Canola	cytosol	12.86	29.51
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	24.29	28.75
CDY45059	Canola	cytosol	15.36	28.29
Solyc12g099900.1.1	Tomato	nucleus	23.21	27.78
Bra018848.1-P	Field mustard	cytosol	21.79	27.73
CDY22795	Canola	cytosol, plastid	21.96	27.7
VIT_13s0019g01220.t01	Wine grape	cytosol	23.57	27.62
PGSC0003DMT400011839	Potato	cytosol	23.04	27.56
PGSC0003DMT400058477	Potato	cytosol	23.21	27.54
KRH29080	Soybean	cytosol	22.32	27.47
KRH24106	Soybean	cytosol, nucleus, peroxisome	21.96	27.03
Bra014251.1-P	Field mustard	cytosol	21.43	26.97
CDY03601	Canola	cytosol	21.61	26.95
Solyc01g008910.2.1	Tomato	cytosol	22.86	26.89
Os06t0211500-00	Rice	cytosol	9.11	26.7
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	22.14	26.67
VIT_06s0009g02390.t01	Wine grape	cytosol	22.32	26.37
KRH29971	Soybean	cytosol	20.36	25.79
Os12t0138100-00	Rice	cytosol	22.32	25.41
Os11t0141500-00	Rice	cytosol	22.32	25.41
KRH27822	Soybean	nucleus, plastid	21.43	25.37
KRH62871	Soybean	cytosol	19.64	24.83
AT1G50420.1	Thale cress	cytosol	20.89	24.27
Os01t0646300-01	Rice	cytosol	20.18	22.83
Os07t0567700-02	Rice	cytosol	18.39	22.54
Os05t0574900-01	Rice	plasma membrane	19.11	21.4
Os12t0138200-00	Rice	cytosol	19.29	21.18
Os06t0610350-01	Rice	cytosol	16.61	21.09
Os05t0485400-00	Rice	peroxisome	18.57	20.8
Os03t0707600-01	Rice	nucleus	23.21	20.8
Os11t0141700-00	Rice	cytosol	18.57	20.55
Os03t0723000-01	Rice	nucleus	21.07	20.42
Os02t0197300-00	Rice	cytosol	16.07	20.18
Os06t0127800-01	Rice	plastid	19.82	17.99
Os04t0432100-00	Rice	nucleus	15.71	17.46
Os11t0124300-01	Rice	nucleus, plastid	20.0	17.2
Os12t0122000-01	Rice	plastid	20.18	17.12
CDY37137	Canola	plastid	21.79	12.79
GSMUA_Achr11P...	Banana	cytosol	24.11	12.25
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	2.86	4.53
Os11t0141550-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.12	ProteinID:AAU10734.1	ProteinID:AAU43941.1	ProteinID:BAS93743.1	GO:GO:0000989	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
EnsemblPlantsGene:Os05g0378500	EnsemblPlants:Os05t0378500-00	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13
UniProt:Q688G4	InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI000042AC14	SEG:seg	:

Description

Transcription factor GRAS domain containing protein. (Os05t0378500-00)

Coordinates

chr5:+:18275763..18277445

Molecular Weight (calculated)

58186.8 Da

IEP (calculated)

8.050

GRAVY (calculated)

0.182

Length

560 amino acids

Sequence
(BLAST)

001: MVAQAATAAA TTTAAATTAA VPMTNFQLFG SMVPVPVASM ATATAPAAVA AADNGGHGSS SASQNASGSG EGQGGSMSLS LQLRPLGSTP TAAVAVSVPP
101: MAAAPMMAGP AAAAPAPAPP LATMAVAQNA SLAAVASALA AHRRNQATHR SAALHGHLRR CAEALAASRP ADADAELASI ARMASSDGDA VQRVAAAFAE
201: AMARVVIRPW RGVSAALFPS DAGAAGDALT AWEAEFARQS FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IVDLGGIHHA HWVELLQGLA TRRAAVRPCL
301: RLTIVHEHKH FLGQAAQVLA AESDRHGVPL DLHIVESSVE ALKLDALGVR SDHAVVIVST LQLHRLVGAG ILSTTAPPSP AAAAAASMIT SPLPPANMSS
401: KVDRLLRGFH LLSPRAIILT ENEANHFVPS FTDRFASALP YYEQLFAAME EAGAATVERK AAERYLLREE IKDVIACDHD GPRWARHETL GRWVVRMGAA
501: GFALAPAITV VTAAGRVRAV AARLPGGGDE RRYGVTEGGG WLILNREEKP MFCVSAWRRQ

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.