Factsheet for Os11t0124300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0242200-01
Os01t0777400-01
Os01t0777600-01
Os01t0874700-01
Os01t0922800-01
Os02t0327000-01
Os03t0122600-01
Os03t0177400-01
Os03t0177500-01
Os03t0177900-01
Os03t0178000-02
Os03t0278200-01
Os03t0433200-00
Os05t0429400-01
Os05t0432200-00
Os06t0108500-01
Os06t0152100-01
Os07t0581366-00
Os07t0586900-01
Os08t0531900-01
Os08t0538700-01
Os10t0323600-01
Os10t0323900-01
Os10t0536100-01
Os11t0124300-01
Os11t0533500-01
Os12t0122000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	Os01t0242200-01	AT1G03840.1	17785527
AT3G54220.1	Os07t0581366-00	AT1G03840.1	17785527
AT3G54220.1	Os03t0177400-01	AT1G07920.1	19228333
AT3G54220.1	Os03t0177500-01	AT1G07920.1	19228333
AT3G54220.1	Os03t0177900-01	AT1G07920.1	19228333
AT3G54220.1	Os03t0178000-02	AT1G07920.1	19228333
AT3G54220.1	Os03t0177400-01	AT1G07930.1	19228333
AT3G54220.1	Os03t0177500-01	AT1G07930.1	19228333
AT3G54220.1	Os03t0177900-01	AT1G07930.1	19228333
AT3G54220.1	Os03t0178000-02	AT1G07930.1	19228333
AT3G54220.1	Os01t0777400-01	AT1G27050.1	19228333
AT3G54220.1	Os01t0777600-01	AT1G27050.1	19228333
AT3G54220.1	Os01t0874700-01	AT1G72160.1	19228333
AT3G54220.1	Os05t0429400-01	AT1G72160.1	19228333
AT3G54220.1	Os05t0432200-00	AT1G75750.1	19228333
AT3G54220.1	Os03t0278200-01	AT1G78570.1	19228333
AT3G54220.1	Os02t0327000-01	AT2G01540.1	19228333
AT3G54220.1	Os06t0152100-01	AT2G19760.1	21798944
AT3G54220.1	Os10t0323600-01	AT2G19760.1	21798944
AT3G54220.1	Os10t0323900-01	AT2G19760.1	21798944
AT3G54220.1	Os01t0922800-01	AT2G45660.1	19228333
AT3G54220.1	Os03t0122600-01	AT2G45660.1	19228333
AT3G54220.1	Os06t0108500-01	AT2G45660.1	19228333
AT3G54220.1	Os08t0531900-01	AT2G45660.1	19228333
AT3G54220.1	Os10t0536100-01	AT2G45660.1	19228333
AT3G54220.1	Os08t0538700-01	AT3G12280.1	22921914
AT3G54220.1	Os11t0533500-01	AT3G12280.1	22921914
AT3G54220.1	Os11t0124300-01	AT3G54220.1	17785527
AT3G54220.1	Os12t0122000-01	AT3G54220.1	17785527
AT3G54220.1	Os06t0152100-01	AT4G29350.1	21798944
AT3G54220.1	Os10t0323600-01	AT4G29350.1	21798944
AT3G54220.1	Os10t0323900-01	AT4G29350.1	21798944
AT3G54220.1	Os03t0433200-00	AT4G37650.1	17446396
AT3G54220.1	Os07t0586900-01	AT4G37650.1	17446396
AT3G54220.1	Os03t0433200-00	AT4G37650.1	17785527
AT3G54220.1	Os07t0586900-01	AT4G37650.1	17785527
AT3G54220.1	Os03t0433200-00	AT4G37650.1	18500650
AT3G54220.1	Os07t0586900-01	AT4G37650.1	18500650
AT3G54220.1	Os03t0433200-00	AT4G37650.1	22921914
AT3G54220.1	Os07t0586900-01	AT4G37650.1	22921914
AT3G54220.1	Os06t0152100-01	AT5G56600.1	21798944
AT3G54220.1	Os10t0323600-01	AT5G56600.1	21798944
AT3G54220.1	Os10t0323900-01	AT5G56600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0122000-01	Rice	plastid	98.31	96.97
KXG22896	Sorghum	cytosol, plasma membrane	68.51	84.63
HORVU5Hr1G045920.2	Barley	cytosol	74.96	83.42
TraesCS5B01G143100.1	Wheat	plastid	80.95	82.6
TraesCS4A01G191300.1	Wheat	cytosol	77.27	81.52
TraesCS5A01G144000.1	Wheat	plastid	80.8	81.17
TraesCS5D01G148000.1	Wheat	plastid	81.11	80.86
Zm00001d052380_P001	Maize	plastid	82.49	80.39
Bra007056.1-P	Field mustard	mitochondrion, plastid	38.56	79.43
TraesCS4B01G124000.1	Wheat	plastid	82.8	79.38
TraesCS4D01G122000.1	Wheat	plastid	82.64	79.23
Zm00001d005029_P001	Maize	plastid	80.03	76.84
OQU82754	Sorghum	plastid	83.41	76.37
GSMUA_Achr11P...	Banana	plastid	56.22	63.76
CDX78219	Canola	nucleus, plastid	55.45	59.87
CDX73496	Canola	nucleus, plastid	56.53	59.16
GSMUA_Achr8P09400_001	Banana	cytosol	58.53	56.7
AT3G54220.1	Thale cress	nucleus, plastid	56.07	55.9
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	58.83	54.17
Os07t0567700-02	Rice	cytosol	37.02	52.74
VIT_08s0056g00050.t01	Wine grape	nucleus	60.98	50.77
Solyc10g074680.1.1	Tomato	cytosol	59.75	47.09
PGSC0003DMT400043358	Potato	cytosol	59.45	46.85
KRH40615	Soybean	nucleus, plastid	57.3	45.32
KRH00551	Soybean	nucleus, plastid	56.84	43.94
Os01t0948200-00	Rice	cytosol	23.2	34.16
Os05t0485400-00	Rice	peroxisome	25.04	32.6
Os01t0646300-01	Rice	cytosol	22.43	29.49
Os06t0610350-01	Rice	cytosol	19.97	29.48
Os02t0197300-00	Rice	cytosol	20.12	29.37
Os06t0211500-00	Rice	cytosol	7.83	26.7
Os12t0138100-00	Rice	cytosol	19.97	26.42
Os11t0141500-00	Rice	cytosol	19.66	26.02
Os05t0574900-01	Rice	plasma membrane	19.82	25.8
Os03t0707600-01	Rice	nucleus	24.42	25.44
Os03t0723000-01	Rice	nucleus	22.12	24.91
Os11t0141700-00	Rice	cytosol	19.05	24.51
Os12t0138200-00	Rice	cytosol	19.05	24.31
Os06t0127800-01	Rice	plastid	22.73	23.99
Os04t0432100-00	Rice	nucleus	18.43	23.81
Os05t0378200-00	Rice	cytosol	17.36	20.51
Os05t0378500-00	Rice	plastid	17.2	20.0
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	3.07	5.67
Os11t0141550-01	Rice	cytosol	0.77	3.88

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.5	EntrezGene:4349638	ProteinID:ABA91267.1	ProteinID:BAF27462.1	ProteinID:BAT12470.1
ncoils:Coil	ProteinID:EAZ17249.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356
GO:GO:0009058	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009956
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048366	GO:GO:0051457	GO:GO:0090610
InterPro:IPR005202	EnsemblPlantsGene:Os11g0124300	EnsemblPlants:Os11t0124300-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF12	UniProt:Q2RB59	InterPro:TF_GRAS	UniParc:UPI000068257A	RefSeq:XP_015615402.1	SEG:seg

Description

SCARECROW 1Similar to SCARECROW. (Os11t0124300-01)

Coordinates

chr11:+:1119746..1123350

Molecular Weight (calculated)

69922.0 Da

IEP (calculated)

6.331

GRAVY (calculated)

-0.221

Length

651 amino acids

Sequence
(BLAST)

001: MGSSSLLLFP SSSSSATHSS YSPSSSSHAI TSLLPPLPSD HHLLLYLDHQ EQHHLAAAMV RKRPASDMDL PPPRRHVTGD LSDVTAAAAP SSASAQLPAL
101: PTQLPAFHHT DMDLAAPAPP PPQQQVAAGE GGPPSTAWVD GIIRDIIASS GAAVSVAQLI HNVREIIRPC NPDLASILEL RLRSLLTSDP APPPPPPPSH
201: PALLPPDATA PPPPPTSVAA LPPPPPPQPD KRRREPQCQE QEPNQPQSPK PPTAEETAAA AAAAKERKEE QRRKQRDEEG LHLLTLLLQC AESVNADNLD
301: EAHRALLEIA ELATPFGTST QRVAAYFAEA MSARLVSSCL GLYAPLPNPS PAAARLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE REERVHIIDL
401: DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLRHSLY DVTGSDSNTL
501: WLIQRLAPKV VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA VGGPARTGDV KFGSWREKLA QSGFRVSSLA
601: GSAAAQAVLL LGMFPSDGYT LIEENGALKL GWKDLCLLTA SAWRPIQASG R

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.