Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os11t0124300-01 | |
| Os12t0122000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | Os11t0124300-01 | AT3G54220.1 | 19228333 |
| AT1G27050.1 | Os12t0122000-01 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0777600-01 | Rice | mitochondrion | 100.0 | 100.0 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 35.48 | 24.86 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 32.26 | 23.67 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 33.87 | 23.46 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 31.45 | 22.16 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 29.03 | 20.34 |
| KRH25616 | Soybean | cytosol | 16.94 | 17.95 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 25.81 | 17.49 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 23.39 | 15.51 |
| Bra012430.1-P | Field mustard | nucleus | 21.77 | 14.44 |
| CDY40279 | Canola | nucleus | 21.77 | 14.44 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 22.58 | 13.66 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 22.58 | 13.66 |
| CDY28440 | Canola | mitochondrion, nucleus | 21.77 | 13.3 |
| Solyc05g006960.2.1 | Tomato | nucleus | 23.39 | 12.78 |
Protein Annotations
| EnsemblPlants:Os01t0777400-01 | EnsemblPlantsGene:Os01g0777400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| ProteinID:BAF06336.1 | ProteinID:BAS74614.1 | ProteinID:BAS74617.1 | UniParc:UPI0000DD8D58 | UniProt:Q0JIU2 | MapMan:35.2 |
Description
Conserved hypothetical protein. (Os01t0777400-01)
Coordinates
chr1:+:32901281..32902616
Molecular Weight (calculated)
13821.0 Da
IEP (calculated)
6.760
GRAVY (calculated)
-0.273
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: TYFALYFSRN ASALWLCSRH KINRTKFLTD SGEAIACYTC FEPFGTLALR YSDCWFFHGL QVLVVQASEA PNDLRSTAQA NPVGENTHDA TKRNASESSA
101: FSSTKAAPEG TYKAREIVAY DDLF
101: FSSTKAAPEG TYKAREIVAY DDLF
001: MATRGAVAAA ASTIWKHRRN PSLRSLSRHF NPNFNHRIIP TGFKYQVRAI QGTSTDPVIT PLKNREEPKP QNWKIKMLYD GDCPLCMREV NMLMERNEKH
101: GTIKFVDISS NDYSPEDNQG LDYKTVMGQI HAIQSDGNVV KGVEAFRRLY EEVGLGWVYT ITKFEPIGKL ADVVYDVWAK YRLQVTGRPS IEAILEARKK
201: DKVETCGESK NCKI
101: GTIKFVDISS NDYSPEDNQG LDYKTVMGQI HAIQSDGNVV KGVEAFRRLY EEVGLGWVYT ITKFEPIGKL ADVVYDVWAK YRLQVTGRPS IEAILEARKK
201: DKVETCGESK NCKI
Arabidopsis Description
Uncharacterized protein At5g50100, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W485]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.