Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012430.1-P | Field mustard | nucleus | 74.63 | 81.82 |
| CDY40279 | Canola | nucleus | 72.68 | 79.68 |
| CDY28440 | Canola | mitochondrion, nucleus | 76.59 | 77.34 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 44.39 | 48.66 |
| KRH25616 | Soybean | cytosol | 24.39 | 42.73 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 41.95 | 41.95 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 36.59 | 40.98 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 31.22 | 37.87 |
| Solyc05g006960.2.1 | Tomato | nucleus | 41.46 | 37.44 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 32.68 | 37.43 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 31.71 | 36.93 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 31.71 | 36.72 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 30.73 | 35.59 |
| Os01t0777400-01 | Rice | mitochondrion | 13.66 | 22.58 |
| Os01t0777600-01 | Rice | mitochondrion | 13.66 | 22.58 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:839594 | ProteinID:AAF79854.1 | ProteinID:AEE30774.1 | EMBL:AF462825 |
| ArrayExpress:AT1G27050 | EnsemblPlantsGene:AT1G27050 | RefSeq:AT1G27050 | TAIR:AT1G27050 | RefSeq:AT1G27050-TAIR-G | EnsemblPlants:AT1G27050.1 |
| TAIR:AT1G27050.1 | Symbol:ATHB54 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_174025.4 | InterPro:Nucleotide-bd_a/b_plait_sf |
| UniProt:P0CJ66 | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50102 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001E92A5D | SEG:seg |
Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
Coordinates
chr1:+:9393653..9394716
Molecular Weight (calculated)
22454.8 Da
IEP (calculated)
10.651
GRAVY (calculated)
-0.572
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.