Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | CDX73496 | AT3G54220.1 | 19228333 |
| AT1G27050.1 | CDX78219 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012430.1-P | Field mustard | nucleus | 86.21 | 93.58 |
| CDY40279 | Canola | nucleus | 85.71 | 93.05 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 77.34 | 76.59 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 46.8 | 50.8 |
| KRH25616 | Soybean | cytosol | 28.08 | 48.72 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 42.36 | 41.95 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 37.44 | 41.53 |
| Solyc05g006960.2.1 | Tomato | nucleus | 42.86 | 38.33 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 32.51 | 37.29 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 30.54 | 36.69 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 32.02 | 36.31 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 31.03 | 35.8 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 30.54 | 35.03 |
| Os01t0777400-01 | Rice | mitochondrion | 13.3 | 21.77 |
| Os01t0777600-01 | Rice | mitochondrion | 13.3 | 21.77 |
Protein Annotations
| EnsemblPlants:CDY28440 | EnsemblPlantsGene:GSBRNA2T00040317001 | Gene3D:3.30.70.330 | GO:A0A078GPE4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY28440 | ProteinID:CDY28440.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EC687D | UniProt:A0A078GPE4 | MapMan:35.1 | : |
Description
BnaC07g12680DBnaC07g12680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPE4]
Coordinates
chrLK032220:+:267798..268602
Molecular Weight (calculated)
22480.7 Da
IEP (calculated)
10.373
GRAVY (calculated)
-0.742
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKREKPYT YRHTPARISK RRRPWAPPPS LETNEIIDKP TAKPQPPPGL LVSGLPANCS VLELKSRFEI YGSISRIRID EDGVGSVSYR TAESAEAAIA
101: GSHEPSFGIS IDSKKLEVAW GTDPLVTWKE SVKVGEEKEK TSPSLSSKLL RAEMSLRKHG RRNRLASTIV NPRSKNPDGD GSKSPATTRG FKDRDIVAYD
201: DIL
101: GSHEPSFGIS IDSKKLEVAW GTDPLVTWKE SVKVGEEKEK TSPSLSSKLL RAEMSLRKHG RRNRLASTIV NPRSKNPDGD GSKSPATTRG FKDRDIVAYD
201: DIL
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Arabidopsis Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.