Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os11t0124300-01 | |
| Os12t0122000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | Os11t0124300-01 | AT3G54220.1 | 19228333 |
| AT1G27050.1 | Os12t0122000-01 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0777400-01 | Rice | mitochondrion | 100.0 | 100.0 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 35.48 | 24.86 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 32.26 | 23.67 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 33.87 | 23.46 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 31.45 | 22.16 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 29.03 | 20.34 |
| KRH25616 | Soybean | cytosol | 16.94 | 17.95 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 25.81 | 17.49 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 23.39 | 15.51 |
| Bra012430.1-P | Field mustard | nucleus | 21.77 | 14.44 |
| CDY40279 | Canola | nucleus | 21.77 | 14.44 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 22.58 | 13.66 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 22.58 | 13.66 |
| CDY28440 | Canola | mitochondrion, nucleus | 21.77 | 13.3 |
| Solyc05g006960.2.1 | Tomato | nucleus | 23.39 | 12.78 |
Protein Annotations
| EnsemblPlants:Os01t0777600-01 | EnsemblPlantsGene:Os01g0777600 | ProteinID:BAF06336.1 | ProteinID:BAS74614.1 | ProteinID:BAS74617.1 | UniParc:UPI0000DD8D58 |
| UniProt:Q0JIU2 | MapMan:35.2 | : | : | : | : |
Description
Conserved hypothetical protein. (Os01t0777600-01)
Coordinates
chr1:+:32907633..32908968
Molecular Weight (calculated)
13821.0 Da
IEP (calculated)
6.760
GRAVY (calculated)
-0.273
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: TYFALYFSRN ASALWLCSRH KINRTKFLTD SGEAIACYTC FEPFGTLALR YSDCWFFHGL QVLVVQASEA PNDLRSTAQA NPVGENTHDA TKRNASESSA
101: FSSTKAAPEG TYKAREIVAY DDLF
101: FSSTKAAPEG TYKAREIVAY DDLF
001: MSCVTPALPP SLFTNGYLSS PQNISMTNLN SSVKVSDSGA YKWRLVIAYD GTRFAGWQYQ ESPPTIQSML EKALIQITEL GRKELQLIGA GRTDAGVHAW
101: GQVAHFVTPF NYTSLDSFHA ALNGLLPKDI RVRELSAAVP EFHARFSASS KVYRYQIYND TFMDPFQRHW AYHCAYKLNA SKMREAANLF VGKHDFSAFA
201: NATREDGVPD PLKTISRFDV IQMGSLLQLE VEGSGFLYRQ VRNMVALLIQ IGKEALDSDI VPMILETKDR RVLAKYTSLP ASPHGLCLVS VKYKEDHLKL
301: PLDCPVTSSG RHHTITKCKL PFY
101: GQVAHFVTPF NYTSLDSFHA ALNGLLPKDI RVRELSAAVP EFHARFSASS KVYRYQIYND TFMDPFQRHW AYHCAYKLNA SKMREAANLF VGKHDFSAFA
201: NATREDGVPD PLKTISRFDV IQMGSLLQLE VEGSGFLYRQ VRNMVALLIQ IGKEALDSDI VPMILETKDR RVLAKYTSLP ASPHGLCLVS VKYKEDHLKL
301: PLDCPVTSSG RHHTITKCKL PFY
Arabidopsis Description
tRNA pseudouridine synthase [Source:UniProtKB/TrEMBL;Acc:A1A6J3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.