Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra007056.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | Bra007056.1-P | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40279 | Canola | nucleus | 96.26 | 96.26 |
| CDY28440 | Canola | mitochondrion, nucleus | 93.58 | 86.21 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 81.82 | 74.63 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 49.73 | 49.73 |
| KRH25616 | Soybean | cytosol | 28.34 | 45.3 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 44.92 | 40.98 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 38.5 | 39.34 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 34.22 | 37.87 |
| Solyc05g006960.2.1 | Tomato | nucleus | 45.45 | 37.44 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 35.83 | 37.43 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 35.29 | 37.29 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 34.76 | 36.93 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 34.22 | 36.16 |
| Os01t0777400-01 | Rice | mitochondrion | 14.44 | 21.77 |
| Os01t0777600-01 | Rice | mitochondrion | 14.44 | 21.77 |
Protein Annotations
| EnsemblPlants:Bra012430.1 | EnsemblPlants:Bra012430.1-P | EnsemblPlantsGene:Bra012430 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002540B8B | UniProt:M4D7H0 | MapMan:35.1 | : | : | : |
Description
AT1G27050 (E=1e-062) ATHB54 | ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54); nucleic acid binding / transcription factor
Coordinates
chrA07:+:7721062..7721690
Molecular Weight (calculated)
20883.9 Da
IEP (calculated)
10.490
GRAVY (calculated)
-0.673
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKRENPYT YRHTPARISK RRRPWAPPPS LETNEIIDKP TAKPPPPPAL VVSGLPANCS VLELKSRFEI YGSISRIRID KDGVGSVSYR TAESAEAAIA
101: GSHEPSFGIS IDSKKLEVAW ATDPLVGEEK EKTSPWLSSK LVRAEMSLRK HGRRNRLAST IVNPRSQSPA TRREVKDRDI VAYDDIL
101: GSHEPSFGIS IDSKKLEVAW ATDPLVGEEK EKTSPWLSSK LVRAEMSLRK HGRRNRLAST IVNPRSQSPA TRREVKDRDI VAYDDIL
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Arabidopsis Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.