Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | CDX73496 | AT3G54220.1 | 19228333 |
| AT1G27050.1 | CDX78219 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012430.1-P | Field mustard | nucleus | 96.26 | 96.26 |
| CDY28440 | Canola | mitochondrion, nucleus | 93.05 | 85.71 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 79.68 | 72.68 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 50.27 | 50.27 |
| KRH25616 | Soybean | cytosol | 27.27 | 43.59 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 40.64 | 41.53 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 43.85 | 40.0 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 34.76 | 38.46 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 36.36 | 37.99 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 35.29 | 37.5 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 35.29 | 37.29 |
| Solyc05g006960.2.1 | Tomato | nucleus | 44.38 | 36.56 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 34.22 | 36.16 |
| Os01t0777400-01 | Rice | mitochondrion | 14.44 | 21.77 |
| Os01t0777600-01 | Rice | mitochondrion | 14.44 | 21.77 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HSK7 | UniProt:A0A078HSK7 | EnsemblPlants:CDY40279 | ProteinID:CDY40279 |
| ProteinID:CDY40279.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00069448001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDD38C | SEG:seg | : |
Description
BnaA07g09210DBnaA07g09210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSK7]
Coordinates
chrLK032467:+:218555..219412
Molecular Weight (calculated)
20807.8 Da
IEP (calculated)
10.295
GRAVY (calculated)
-0.630
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKRENPYT YRHTPARISK RRRPWAPPPS LETNEIIDKP TAKPPPPPAL LVTGLPANCS VLELKSRFEI YGSISRIRID EDGVGSVSYR NAESAEAAIA
101: GSHEPSFGIS IDSKKLEVAW ATDPLVGEEK EKTSPSLSSK LVRAEISLRK HGRRNRLAST IVIPRSQSPA TRREVKDRDI VAYDDIL
101: GSHEPSFGIS IDSKKLEVAW ATDPLVGEEK EKTSPSLSSK LVRAEISLRK HGRRNRLAST IVIPRSQSPA TRREVKDRDI VAYDDIL
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Arabidopsis Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.