Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | KXG22896 | AT3G54220.1 | 19228333 |
| AT1G27050.1 | OQU82754 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 65.54 | 65.54 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 61.02 | 63.91 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 63.28 | 63.64 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 63.84 | 63.13 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 44.07 | 42.62 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 39.55 | 37.43 |
| Os01t0777400-01 | Rice | mitochondrion | 24.86 | 35.48 |
| Os01t0777600-01 | Rice | mitochondrion | 24.86 | 35.48 |
| Bra012430.1-P | Field mustard | nucleus | 37.29 | 35.29 |
| CDY40279 | Canola | nucleus | 37.29 | 35.29 |
| CDY28440 | Canola | mitochondrion, nucleus | 37.29 | 32.51 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 35.59 | 30.73 |
| KRH25616 | Soybean | cytosol | 19.77 | 29.91 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 32.77 | 28.29 |
| Solyc05g006960.2.1 | Tomato | nucleus | 32.2 | 25.11 |
Protein Annotations
| EnsemblPlants:OQU87658 | EnsemblPlantsGene:SORBI_3003G315000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PFscan:PS50102 | ProteinID:OQU87657.1 | ProteinID:OQU87658 | ProteinID:OQU87658.1 | ProteinID:OQU87659.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0009DC83C7 | UniProt:A0A1W0VZV8 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr3:+:64297778..64303390
Molecular Weight (calculated)
18137.5 Da
IEP (calculated)
10.589
GRAVY (calculated)
-0.276
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRRRRGKRG RTSPGPPTKR RRGGAPEIES DDYPEPVPTP APAAPQPSSV MVAGLPPGCG VLELKSRLEA YGPIARARVD ASAATGYVTF RSGAAAVAAI
101: AASLDPGGGI AIGSKKVLVV QASAAPHNSI RAAESAGRSS HDATVKNVTD NSAMLSSKAA SGVTYKAREI VAYDDLF
101: AASLDPGGGI AIGSKKVLVV QASAAPHNSI RAAESAGRSS HDATVKNVTD NSAMLSSKAA SGVTYKAREI VAYDDLF
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Arabidopsis Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.