Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400043358 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27050.1 | PGSC0003DMT400043358 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g006960.2.1 | Tomato | nucleus | 96.59 | 87.22 |
| KRH25616 | Soybean | cytosol | 28.29 | 49.57 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 44.88 | 49.2 |
| Bra012430.1-P | Field mustard | nucleus | 40.98 | 44.92 |
| CDY40279 | Canola | nucleus | 40.0 | 43.85 |
| CDY28440 | Canola | mitochondrion, nucleus | 41.95 | 42.36 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 41.95 | 41.95 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 32.68 | 36.61 |
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 31.22 | 35.75 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 30.73 | 35.59 |
| TraesCS3A01G319200.1 | Wheat | mitochondrion, nucleus | 28.78 | 34.91 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 29.76 | 34.66 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 28.29 | 32.77 |
| Os01t0777400-01 | Rice | mitochondrion | 13.66 | 22.58 |
| Os01t0777600-01 | Rice | mitochondrion | 13.66 | 22.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045469 | EnsemblPlantsGene:PGSC0003DMG400017639 | EntrezGene:102596136 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG400017639 | RefSeq:XP_006357254.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00029654CF | UniProt:M1BHQ0 | MapMan:35.1 | : | : |
Description
Homeobox-leucine zipper protein ATHB-54 [Source:PGSC_GENE;Acc:PGSC0003DMG400017639]
Coordinates
chr5:+:6073431..6077368
Molecular Weight (calculated)
22798.7 Da
IEP (calculated)
9.470
GRAVY (calculated)
-0.654
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKRDRTHF NRHVPYSFPK RRRPTPITDD PLPVPEDNSS STKQQPATVV VIGVPSECSV LDIKSRFEIY GSISRTRMDP NGLAHITFRS NDSAQSAVEA
101: AEDSSFPITL HSKPVQVIWA TDHASQWKEG VMRKDELSTS TVASKLVKAE VPLSRHGRSN RLGSAIVNPR DEDNDNAGGN VRAHVSTRLV EPYKGREIVA
201: YDDIL
101: AEDSSFPITL HSKPVQVIWA TDHASQWKEG VMRKDELSTS TVASKLVKAE VPLSRHGRSN RLGSAIVNPR DEDNDNAGGN VRAHVSTRLV EPYKGREIVA
201: YDDIL
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Arabidopsis Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.