Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g074680.1.1 | Tomato | cytosol | 96.61 | 96.61 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 32.45 | 84.81 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 43.95 | 68.88 |
| CDX78219 | Canola | nucleus, plastid | 49.27 | 67.5 |
| CDX73496 | Canola | nucleus, plastid | 50.36 | 66.88 |
| GSMUA_Achr11P... | Banana | plastid | 44.79 | 64.46 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 50.24 | 63.55 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 44.19 | 62.39 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 58.23 | 61.51 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 45.76 | 61.26 |
| Os11t0124300-01 | Rice | nucleus, plastid | 46.85 | 59.45 |
| Zm00001d052380_P001 | Maize | plastid | 48.06 | 59.43 |
| TraesCS5B01G143100.1 | Wheat | plastid | 45.52 | 58.93 |
| Os12t0122000-01 | Rice | plastid | 46.73 | 58.48 |
| TraesCS5A01G144000.1 | Wheat | plastid | 45.4 | 57.87 |
| TraesCS5D01G148000.1 | Wheat | plastid | 45.52 | 57.58 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 46.0 | 56.55 |
| TraesCS4B01G124000.1 | Wheat | plastid | 46.37 | 56.41 |
| Zm00001d005029_P001 | Maize | plastid | 46.25 | 56.34 |
| TraesCS4D01G122000.1 | Wheat | plastid | 46.25 | 56.26 |
| OQU82754 | Sorghum | plastid | 47.94 | 55.7 |
| PGSC0003DMT400030652 | Potato | cytosol | 27.36 | 54.99 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 45.04 | 52.62 |
| KRH40615 | Soybean | nucleus, plastid | 52.3 | 52.49 |
| KRH00551 | Soybean | nucleus, plastid | 52.18 | 51.19 |
| PGSC0003DMT400087504 | Potato | nucleus | 25.91 | 44.03 |
| PGSC0003DMT400052191 | Potato | cytosol | 18.77 | 41.33 |
| PGSC0003DMT400011839 | Potato | cytosol | 18.04 | 31.84 |
| PGSC0003DMT400057265 | Potato | nucleus, plastid | 16.46 | 31.55 |
| PGSC0003DMT400023877 | Potato | cytosol | 15.5 | 31.07 |
| PGSC0003DMT400058477 | Potato | cytosol | 17.68 | 30.93 |
| PGSC0003DMT400040589 | Potato | nucleus | 19.49 | 27.38 |
| PGSC0003DMT400039455 | Potato | cytosol | 17.31 | 26.83 |
| PGSC0003DMT400049448 | Potato | nucleus | 15.98 | 25.88 |
| PGSC0003DMT400049445 | Potato | cytosol | 12.59 | 24.7 |
| PGSC0003DMT400007879 | Potato | plastid | 20.1 | 24.45 |
| PGSC0003DMT400038574 | Potato | cytosol | 17.07 | 23.08 |
Protein Annotations
| EntrezGene:102580378 | MapMan:15.5.12 | MapMan:26.3.1.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009630 | GO:GO:0009956 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0048366 |
| GO:GO:0051457 | GO:GO:0090610 | InterPro:IPR005202 | UniProt:M1BEH7 | PFAM:PF03514 | EnsemblPlantsGene:PGSC0003DMG400016833 |
| PGSC:PGSC0003DMG400016833 | EnsemblPlants:PGSC0003DMT400043358 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 | InterPro:TF_GRAS |
| UniParc:UPI000294D0D1 | RefSeq:XP_006365320.1 | SEG:seg | : | : | : |
Description
Protein SCARECROW [Source:PGSC_GENE;Acc:PGSC0003DMG400016833]
Coordinates
chr10:-:48250273..48254623
Molecular Weight (calculated)
90153.9 Da
IEP (calculated)
6.303
GRAVY (calculated)
-0.424
Length
826 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKALPVSGE NCTGVNVVGD SSGENLQATT SKELFHCENG KMVRKRAASD MEIQTGAGEE HRYLRRPAII GGSHSQIGDL RVCGNSNFGH GMNSNTTTTM
101: TTQVSNYSTM QMLPSSTNLC GVTSRGGPGI DTGFSNSTPN LTYTDAITSH HQPQQGTQTQ NNNNSNNQSP SVCVFSGLPL FPPDRNRQNS GLLLQQPPAA
201: AAAVVSSPLT TGRIDSMEDS TSATAWIDSI IKDLINSSAQ VSVPQLIQNV REIIHPCNPY LASLLEYRLR SLTSNNNGGA DQNDPMECWR RKESLPPQLA
301: GLQQAQNNAN LLQHNILSLP DSSNNQYLNW EIANAPVAPS LNQHQQLGGN NPTTTDLSFV TLSPQVQQQQ QQESPHSRSH SQQQAAVDLE QQQKQQQSSS
401: SLSPTSVADN SAKTKTSTPA QPVPINTYRE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF GTSAQRVAAY FSEAMSARLL
501: NSCLGIYAAL PMTSVPMLYT QKMASAFQVF NGISPFIKFS HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGTSMDAL
601: EATGKRLSDF AERLGLHFEF LPVADKVGNL DPEKLNVSKR EAIAVHWLQH SLYDVTGSDS NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA
701: LFDSLGACYG EESEERHVVE QQLLSKEIRN VLAVGGPSRS GDAKFNNWRE KLQQSGFRCL SLAGNAAAQA TLLLGMFPSH GYTLVEDNGT LKLGWKDLCL
801: FTASAWRPNS LHAAPGSRHF SRPNMD
101: TTQVSNYSTM QMLPSSTNLC GVTSRGGPGI DTGFSNSTPN LTYTDAITSH HQPQQGTQTQ NNNNSNNQSP SVCVFSGLPL FPPDRNRQNS GLLLQQPPAA
201: AAAVVSSPLT TGRIDSMEDS TSATAWIDSI IKDLINSSAQ VSVPQLIQNV REIIHPCNPY LASLLEYRLR SLTSNNNGGA DQNDPMECWR RKESLPPQLA
301: GLQQAQNNAN LLQHNILSLP DSSNNQYLNW EIANAPVAPS LNQHQQLGGN NPTTTDLSFV TLSPQVQQQQ QQESPHSRSH SQQQAAVDLE QQQKQQQSSS
401: SLSPTSVADN SAKTKTSTPA QPVPINTYRE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF GTSAQRVAAY FSEAMSARLL
501: NSCLGIYAAL PMTSVPMLYT QKMASAFQVF NGISPFIKFS HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGTSMDAL
601: EATGKRLSDF AERLGLHFEF LPVADKVGNL DPEKLNVSKR EAIAVHWLQH SLYDVTGSDS NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA
701: LFDSLGACYG EESEERHVVE QQLLSKEIRN VLAVGGPSRS GDAKFNNWRE KLQQSGFRCL SLAGNAAAQA TLLLGMFPSH GYTLVEDNGT LKLGWKDLCL
801: FTASAWRPNS LHAAPGSRHF SRPNMD
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.