Factsheet for PGSC0003DMT400047299

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042166
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18960.1	PGSC0003DMT400043358	AT3G54220.1	19228333
AT3G18960.1	PGSC0003DMT400042166	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g068540.2.1	Tomato	nucleus	64.03	68.14
Solyc07g054630.2.1	Tomato	nucleus	65.16	59.86
CDY68372	Canola	nucleus	7.16	22.62
VIT_03s0063g01450.t01	Wine grape	nucleus	14.12	21.13
Bra032286.1-P	Field mustard	nucleus	8.66	20.91
CDY59239	Canola	nucleus	8.66	20.81
CDY29348	Canola	nucleus	8.66	20.81
AT1G49480.2	Thale cress	nucleus	8.85	20.8
CDY22996	Canola	nucleus	12.81	20.8
CDX82319	Canola	nucleus	12.62	20.36
CDY16502	Canola	nucleus	8.47	20.0
Bra014192.1-P	Field mustard	nucleus	7.72	19.25
Bra037544.1-P	Field mustard	nucleus	12.24	19.01
CDY18562	Canola	nucleus	12.24	19.01
CDX95476	Canola	nucleus	11.86	18.37
AT3G18990.2	Thale cress	nucleus	12.81	18.28
CDX99291	Canola	nucleus	11.86	18.21
PGSC0003DMT400043852	Potato	nucleus	12.24	18.01
PGSC0003DMT400096938	Potato	nucleus	6.21	17.93
CDX92293	Canola	nucleus	11.68	17.92
PGSC0003DMT400091092	Potato	nucleus	9.79	17.39
AT4G01580.1	Thale cress	mitochondrion	6.21	17.37
PGSC0003DMT400007199	Potato	nucleus	10.73	17.12
Bra022376.1-P	Field mustard	nucleus	11.68	16.85
AT1G49475.1	Thale cress	mitochondrion, nucleus	5.84	16.32
KRH24554	Soybean	nucleus	13.37	16.1
KRG89212	Soybean	nucleus	13.18	16.09
KRH29559	Soybean	nucleus	12.81	15.78
CDX92291	Canola	nucleus, plastid	6.03	15.09
KRH49567	Soybean	mitochondrion, nucleus	13.18	14.96
AT3G18960.1	Thale cress	nucleus	5.84	14.83
CDX77244	Canola	mitochondrion, nucleus	5.65	14.15
PGSC0003DMT400070034	Potato	cytoskeleton, cytosol, nucleus	6.03	14.04
Bra022374.1-P	Field mustard	nucleus, plastid	5.65	14.02
PGSC0003DMT400007200	Potato	cytosol	8.29	13.41
CDY16501	Canola	nucleus	5.46	13.3
PGSC0003DMT400085817	Potato	nucleus	12.81	13.05
CDX99294	Canola	nucleus	5.08	13.04
Bra014191.1-P	Field mustard	mitochondrion, nucleus	4.9	12.26
PGSC0003DMT400037688	Potato	nucleus	12.43	8.86

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BKH7	PFAM:PF02362
EnsemblPlantsGene:PGSC0003DMG400018369	PGSC:PGSC0003DMG400018369	EnsemblPlants:PGSC0003DMT400047299	PRINTS:PR00929	PFscan:PS50863	PANTHER:PTHR31920
PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000296C8B7	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018369]

Coordinates

chr7:+:48501972..48504212

Molecular Weight (calculated)

60377.4 Da

IEP (calculated)

10.192

GRAVY (calculated)

-0.813

Length

531 amino acids

Sequence
(BLAST)

001: MIWLHDGWQE FMEHHSVNCW YFLLFKYGQT SCFNVHIFDL AATEIDYQLR SHGNAKSRDV TQDLSHGKDK IVGDKGVTSS VEIVDLLETE QGPESSAKSS
101: ELSHRAKRRK IASGKIKISR CYETRSRTNK LHDNGLLLNA KNLNISGNGS LTKPVGGKLV RRSMKTPIHS AVATGDTRKS FTSKQREKSV GLGRYDRRKR
201: AQQKASETSR AIQTAKMFIP ENPYFLQILE KYNIVRNYIL NLPVEFVRKY MPKTSELIEL QDTDGNKWNV RCIRRKHRVL LSKGWLNFVT DNSLLVGDVC
301: VFELIKDVQA DELMLKVHMF RNRVEENSKN LHTGSLSEPT LSTGKNCILQ FDESKHTESS DAFEPLSSDR TNHKTDAENS SGQQQEKSVV HGSSGNRRKR
401: GRPRDAEANT DIENSSGQQQ EKSVVHGSSG NRRKRGRPRD AEANTDIENS SGQQQEKSVV HGSSGNRRKR GRPRDAEANR ATTAAKMFTP ENPYFMITLG
501: EYHVVRNYIL ADELMLKVHI FRNKVEQNSI I

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.