CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29559	Soybean	nucleus	75.51	77.26
KRG89212	Soybean	nucleus	58.28	59.08
CDY68372	Canola	nucleus	22.0	57.74
KRH49567	Soybean	mitochondrion, nucleus	58.73	55.34
CDY18562	Canola	nucleus	42.63	54.97
Bra037544.1-P	Field mustard	nucleus	42.4	54.68
CDY22996	Canola	nucleus	40.14	54.13
CDX82319	Canola	nucleus	39.68	53.19
CDX95476	Canola	nucleus	41.27	53.06
AT3G18990.2	Thale cress	nucleus	43.08	51.08
CDX99291	Canola	nucleus	39.68	50.58
CDX92293	Canola	nucleus	39.46	50.29
AT1G49480.2	Thale cress	nucleus	25.4	49.56
Bra032286.1-P	Field mustard	nucleus	24.26	48.64
CDY16502	Canola	nucleus	24.72	48.44
CDY29348	Canola	nucleus	24.26	48.42
CDY59239	Canola	nucleus	24.26	48.42
Bra022376.1-P	Field mustard	nucleus	39.91	47.83
Bra014192.1-P	Field mustard	nucleus	22.68	46.95
VIT_03s0063g01450.t01	Wine grape	nucleus	30.84	38.31
KRH54937	Soybean	nucleus	22.0	31.7
KRG90691	Soybean	nucleus	18.37	30.34
KRH46518	Soybean	nucleus	19.27	29.82
KRH46517	Soybean	nucleus	16.78	28.91
KRG94732	Soybean	nucleus	16.1	28.4
KRG90690	Soybean	cytosol, mitochondrion, nucleus	17.01	25.17
KRG99575	Soybean	nucleus	19.27	24.71
KRH06798	Soybean	cytosol	19.95	24.24
KRH38154	Soybean	nucleus	19.5	23.89
KRH18416	Soybean	nucleus	16.33	23.53
KRH49477	Soybean	nucleus	16.78	22.98
KRG90688	Soybean	nucleus	6.58	22.66
KRH36061	Soybean	golgi, nucleus	18.14	20.67
Solyc08g068540.2.1	Tomato	nucleus	20.63	18.24
KRH36063	Soybean	nucleus	12.93	18.04
KRH36062	Soybean	nucleus	14.97	17.98
KRG90686	Soybean	nucleus	16.55	16.98
Solyc07g054630.2.1	Tomato	nucleus	21.54	16.44
KRH38192	Soybean	endoplasmic reticulum, golgi	19.27	16.1
KRG90687	Soybean	nucleus	16.1	15.64
PGSC0003DMT400047299	Potato	nucleus	16.1	13.37

Protein Annotations

EntrezGene:100813285	MapMan:15.5.5.2	Gene3D:2.40.330.10	EMBL:ACUP02007178	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
EnsemblPlantsGene:GLYMA_12G048600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1LQ96	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRH24554	ProteinID:KRH24554	ProteinID:KRH24554.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00023D11F7	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:3505153..3508065

Molecular Weight (calculated)

50120.9 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.499

Length

441 amino acids

Sequence
(BLAST)

001: MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELLPIVT LSVPDGSVWR VGLKKADNKY WFLDGWKEFV KHYSISIGYL LVFKYEGKSS FSVHIFNLAT
101: SEINYQSATR SSNEGLHFTN RLKLFEEIED EDSIEISDSS PSHLAPSSLQ NQALTGSVDK MMPGKSYTPP ALQNLFNGSK LNSINWGEGG NAHSSRIANS
201: LDNRLTRDIG LQFNAVEFKR STEELKLRAS MEERMKKTTR KKRKSVCASA DGQDPSAEHE EEVEMRLRFY ESASARKRTV TAEERERAIN AAKAFEPPNP
301: FCRVVLRPSY LYRGCIMYLP SCFAEKHLNG VSGFIKLQIS NGRQWPVRCL YRGGRAKLSQ GWFEFSLENN LGEGDVCVFE LLRMKEVVLQ VTVFRVIEDV
401: GLLSPPLQQN QNMSSAKMLN TPLQQHLTST KMVRNQQQVH S

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.