Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29348 | Canola | nucleus | 98.64 | 98.19 |
| CDY59239 | Canola | nucleus | 95.91 | 95.48 |
| Bra014192.1-P | Field mustard | nucleus | 73.64 | 76.06 |
| AT1G49480.2 | Thale cress | nucleus | 70.91 | 69.03 |
| Bra037544.1-P | Field mustard | nucleus | 58.64 | 37.72 |
| Bra022376.1-P | Field mustard | nucleus | 58.18 | 34.78 |
| KRG89212 | Soybean | nucleus | 49.55 | 25.06 |
| KRH29559 | Soybean | nucleus | 47.73 | 24.36 |
| KRH24554 | Soybean | nucleus | 48.64 | 24.26 |
| KRH49567 | Soybean | mitochondrion, nucleus | 49.09 | 23.08 |
| VIT_03s0063g01450.t01 | Wine grape | nucleus | 34.09 | 21.13 |
| Bra014191.1-P | Field mustard | mitochondrion, nucleus | 10.0 | 10.38 |
| Solyc08g068540.2.1 | Tomato | nucleus | 20.45 | 9.02 |
| Bra022374.1-P | Field mustard | nucleus, plastid | 8.64 | 8.88 |
| PGSC0003DMT400047299 | Potato | nucleus | 20.91 | 8.66 |
| Solyc07g054630.2.1 | Tomato | nucleus | 21.82 | 8.3 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | EnsemblPlantsGene:Bra032286 | EnsemblPlants:Bra032286.1 | EnsemblPlants:Bra032286.1-P |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:M4EU04 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31920 | PANTHER:PTHR31920:SF22 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI0002547BC6 | SEG:seg | : | : | : |
Description
AT1G49480 (E=2e-090) RTV1 | RTV1 (related to vernalization1 1); DNA binding / transcription factor
Coordinates
chrA05:+:11943727..11944538
Molecular Weight (calculated)
25274.0 Da
IEP (calculated)
10.076
GRAVY (calculated)
-0.755
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAQNEFNK RARLFEDRQK EETRVTHPLI PKSNAPLNEG YEGSTTTQSL FTDSKPEVAT PKVPKKRGRK KKNPNPEEIN SSTPENSSKF YKSASDRKRT
101: VTAEERERAI SAAKTYEPTN PFFRVVLRPS YLYRGCIMYL PSGFAEKYLS GIAGFIKLQL GEKQWPVRCL YKAGRAKFSQ GWYEFTLENN IGEGDVCVFE
201: LLRTRDFVLK VTAFRVTQYV
101: VTAEERERAI SAAKTYEPTN PFFRVVLRPS YLYRGCIMYL PSGFAEKYLS GIAGFIKLQL GEKQWPVRCL YKAGRAKFSQ GWYEFTLENN IGEGDVCVFE
201: LLRTRDFVLK VTAFRVTQYV
001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
Arabidopsis Description
REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.