Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24554 | Soybean | nucleus | 77.26 | 75.51 |
| KRG89212 | Soybean | nucleus | 61.48 | 60.92 |
| KRH49567 | Soybean | mitochondrion, nucleus | 61.48 | 56.62 |
| CDY68372 | Canola | nucleus | 22.04 | 56.55 |
| CDY18562 | Canola | nucleus | 41.76 | 52.63 |
| CDY22996 | Canola | nucleus | 39.91 | 52.6 |
| Bra037544.1-P | Field mustard | nucleus | 41.53 | 52.34 |
| CDX82319 | Canola | nucleus | 39.44 | 51.67 |
| CDX95476 | Canola | nucleus | 40.6 | 51.02 |
| CDX92293 | Canola | nucleus | 39.44 | 49.13 |
| CDX99291 | Canola | nucleus | 39.44 | 49.13 |
| AT3G18990.2 | Thale cress | nucleus | 42.23 | 48.92 |
| AT1G49480.2 | Thale cress | nucleus | 25.29 | 48.23 |
| Bra032286.1-P | Field mustard | nucleus | 24.36 | 47.73 |
| CDY29348 | Canola | nucleus | 24.36 | 47.51 |
| CDY59239 | Canola | nucleus | 24.36 | 47.51 |
| Bra022376.1-P | Field mustard | nucleus | 39.91 | 46.74 |
| CDY16502 | Canola | nucleus | 24.36 | 46.67 |
| Bra014192.1-P | Field mustard | nucleus | 22.51 | 45.54 |
| VIT_03s0063g01450.t01 | Wine grape | nucleus | 32.25 | 39.15 |
| KRH54937 | Soybean | nucleus | 21.58 | 30.39 |
| KRH46517 | Soybean | nucleus | 17.4 | 29.3 |
| KRH46518 | Soybean | nucleus | 19.26 | 29.12 |
| KRG94732 | Soybean | nucleus | 16.71 | 28.8 |
| KRG90691 | Soybean | nucleus | 17.63 | 28.46 |
| KRG99575 | Soybean | nucleus | 20.19 | 25.29 |
| KRG90690 | Soybean | cytosol, mitochondrion, nucleus | 17.17 | 24.83 |
| KRH06798 | Soybean | cytosol | 20.65 | 24.52 |
| KRH49477 | Soybean | nucleus | 18.1 | 24.22 |
| KRH18416 | Soybean | nucleus | 17.17 | 24.18 |
| KRH38154 | Soybean | nucleus | 19.95 | 23.89 |
| KRG90688 | Soybean | nucleus | 6.5 | 21.88 |
| KRH36061 | Soybean | golgi, nucleus | 17.63 | 19.64 |
| KRH36062 | Soybean | nucleus | 15.31 | 17.98 |
| KRG90686 | Soybean | nucleus | 17.4 | 17.44 |
| Solyc08g068540.2.1 | Tomato | nucleus | 20.19 | 17.43 |
| KRH36063 | Soybean | nucleus | 12.3 | 16.77 |
| KRH38192 | Soybean | endoplasmic reticulum, golgi | 19.95 | 16.29 |
| KRG90687 | Soybean | nucleus | 16.94 | 16.08 |
| Solyc07g054630.2.1 | Tomato | nucleus | 21.11 | 15.74 |
| PGSC0003DMT400047299 | Potato | nucleus | 15.78 | 12.81 |
Protein Annotations
| EntrezGene:100815020 | MapMan:15.5.5.2 | Gene3D:2.40.330.10 | EMBL:ACUP02006806 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf |
| EnsemblPlantsGene:GLYMA_11G124100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | UniProt:I1LJK6 | InterPro:IPR003340 |
| InterPro:IPR015300 | EnsemblPlants:KRH29559 | ProteinID:KRH29559 | ProteinID:KRH29559.1 | ProteinID:KRH29560.1 | PFAM:PF02362 |
| PFscan:PS50863 | PANTHER:PTHR31920 | PANTHER:PTHR31920:SF22 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0001B37131 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:9434247..9437889
Molecular Weight (calculated)
48893.3 Da
IEP (calculated)
9.107
GRAVY (calculated)
-0.508
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELSPIVT LSVPDGSVWH VGLKKADNKY CFLDGWKEFV QRYSIGVGYL LVFRYEGKSS FNVHIFNLAT
101: SEINYQSVTR SSNEGLHFTN CLKFFEEMEG EDSIEISDSS PSHLSPSSLQ NQALAGSVDK MMPGKSYNTP PALQNLFNGS KLNSINWGEG GNAHSSRSAN
201: SLDNRLTRDI GLQFNAVEFK RSTEELKLRA SIEERMKKTT RKKRKSDGQE PSAGHEEEVE MRFRFYESAS ARKRTVTAEE RERVINEAKA FEPSNPFCRV
301: VLRPSYLYRG CIMYLPSCFA EKHLNGVSGF IKLQISNGRQ WPVRCLYKGG RAKLSQGWFE FSLENNLGEG DVCVFELLRM KEVVLQVTIF HVTEDVGLLS
401: PPLQHNQNMT SAKLLSTPLQ QHLTSTKMVR N
101: SEINYQSVTR SSNEGLHFTN CLKFFEEMEG EDSIEISDSS PSHLSPSSLQ NQALAGSVDK MMPGKSYNTP PALQNLFNGS KLNSINWGEG GNAHSSRSAN
201: SLDNRLTRDI GLQFNAVEFK RSTEELKLRA SIEERMKKTT RKKRKSDGQE PSAGHEEEVE MRFRFYESAS ARKRTVTAEE RERVINEAKA FEPSNPFCRV
301: VLRPSYLYRG CIMYLPSCFA EKHLNGVSGF IKLQISNGRQ WPVRCLYKGG RAKLSQGWFE FSLENNLGEG DVCVFELLRM KEVVLQVTIF HVTEDVGLLS
401: PPLQHNQNMT SAKLLSTPLQ QHLTSTKMVR N
001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
Arabidopsis Description
REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.