CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014192.1-P	Field mustard	nucleus	89.33	94.37
CDY59239	Canola	nucleus	74.67	76.02
CDY68372	Canola	nucleus	56.44	75.6
CDY29348	Canola	nucleus	73.33	74.66
AT1G49480.2	Thale cress	nucleus	73.33	73.01
CDY22996	Canola	nucleus	55.56	38.23
CDX95476	Canola	nucleus	58.22	38.19
CDY18562	Canola	nucleus	57.33	37.72
CDX82319	Canola	nucleus	55.11	37.69
CDX99291	Canola	nucleus	57.33	37.28
CDX92293	Canola	nucleus	57.33	37.28
KRG89212	Soybean	nucleus	48.0	24.83
KRH24554	Soybean	nucleus	48.44	24.72
KRH29559	Soybean	nucleus	46.67	24.36
KRH49567	Soybean	mitochondrion, nucleus	47.56	22.86
VIT_03s0063g01450.t01	Wine grape	nucleus	33.33	21.13
CDX77244	Canola	mitochondrion, nucleus	10.67	11.32
CDY16501	Canola	nucleus	10.67	11.01
Solyc08g068540.2.1	Tomato	nucleus	19.56	8.82
PGSC0003DMT400047299	Potato	nucleus	20.0	8.47
Solyc07g054630.2.1	Tomato	nucleus	20.89	8.13
CDX92291	Canola	nucleus, plastid	7.56	8.02
CDX99294	Canola	nucleus	7.11	7.73

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	GO:A0A078FUJ3	UniProt:A0A078FUJ3	InterPro:B3_DNA-bd	EnsemblPlants:CDY16502
ProteinID:CDY16502	ProteinID:CDY16502.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00091101001	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920
PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EE1DAE	SEG:seg	:

Description

BnaA08g02650DBnaA08g02650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUJ3]

Coordinates

chrLK032064:-:510099..511791

Molecular Weight (calculated)

25821.6 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.712

Length

225 amino acids

Sequence
(BLAST)

001: MDSTHSEFNK RARLFEDHQN KDAKVIHPMI PESTTPLDKG YDASTTTQNL FNESKPEVAT PKVLKKRGRK KKNPNPEEVN SSTPRGDDSE NRSKFYESAS
101: ARMRTVTAEE RERAITAAKA YEPTNPFFRV VLRPSYLYRG CIMYLPSGFA EKYFSGISGF IKIQLGEKQW PVRCLYKAGR AKFSQGWYEF TLENNIGEGD
201: VCVFELLSTR DFVLKVTAFR VNQYV

Best Arabidopsis Sequence Match ( AT1G49480.3 )
(BLAST)

001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV

Arabidopsis Description

REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.