Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16502 | Canola | nucleus | 75.6 | 56.44 |
| CDY29348 | Canola | nucleus | 72.62 | 55.2 |
| CDY59239 | Canola | nucleus | 72.02 | 54.75 |
| CDY22996 | Canola | nucleus | 69.64 | 35.78 |
| CDY18562 | Canola | nucleus | 72.02 | 35.38 |
| CDX82319 | Canola | nucleus | 69.05 | 35.26 |
| CDX95476 | Canola | nucleus | 71.43 | 34.99 |
| CDX99291 | Canola | nucleus | 70.24 | 34.1 |
| CDX92293 | Canola | nucleus | 70.24 | 34.1 |
| KRG89212 | Soybean | nucleus | 58.93 | 22.76 |
| KRH29559 | Soybean | nucleus | 56.55 | 22.04 |
| KRH24554 | Soybean | nucleus | 57.74 | 22.0 |
| KRH49567 | Soybean | mitochondrion, nucleus | 58.33 | 20.94 |
| VIT_03s0063g01450.t01 | Wine grape | nucleus | 41.67 | 19.72 |
| Solyc08g068540.2.1 | Tomato | nucleus | 22.02 | 7.41 |
| PGSC0003DMT400047299 | Potato | nucleus | 22.62 | 7.16 |
| CDX77244 | Canola | mitochondrion, nucleus | 8.93 | 7.08 |
| Solyc07g054630.2.1 | Tomato | nucleus | 23.81 | 6.92 |
| CDY16501 | Canola | nucleus | 8.93 | 6.88 |
| CDX92291 | Canola | nucleus, plastid | 7.74 | 6.13 |
| CDX99294 | Canola | nucleus | 6.55 | 5.31 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | GO:A0A078JSI5 | UniProt:A0A078JSI5 | InterPro:B3_DNA-bd | EnsemblPlants:CDY68372 |
| ProteinID:CDY68372 | ProteinID:CDY68372.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00073552001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31920 |
| PANTHER:PTHR31920:SF22 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EC90B7 | SEG:seg | : |
Description
BnaC02g46200DBnaC02g46200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSI5]
Coordinates
chrLK037242:+:3185..3835
Molecular Weight (calculated)
19416.3 Da
IEP (calculated)
10.216
GRAVY (calculated)
-0.597
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPKILKKR GRKKKNPNPE EVNSSTPRGD DSENRSKFYE SASARMRTVT AEERERGITA AKTYEPTNPF FRVVLRPSYL YRGCIMYLPS GFAEKYLSGI
101: SSFIKIQLGE KLWPVRCPYK AGRAKFSQGW YEFTLENNIG ERDVCVFELL STRDFVLKVT AFRVNQYV
101: SSFIKIQLGE KLWPVRCPYK AGRAKFSQGW YEFTLENNIG ERDVCVFELL STRDFVLKVT AFRVNQYV
001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
Arabidopsis Description
REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.