Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77244 | Canola | mitochondrion, nucleus | 72.02 | 74.06 |
| AT1G49475.1 | Thale cress | mitochondrion, nucleus | 50.0 | 57.37 |
| CDX92291 | Canola | nucleus, plastid | 33.49 | 34.43 |
| CDX99294 | Canola | nucleus | 32.57 | 34.3 |
| CDY22996 | Canola | nucleus | 24.31 | 16.21 |
| CDX82319 | Canola | nucleus | 23.39 | 15.5 |
| CDY18562 | Canola | nucleus | 23.85 | 15.2 |
| CDX95476 | Canola | nucleus | 23.39 | 14.87 |
| CDX99291 | Canola | nucleus | 23.39 | 14.74 |
| CDX92293 | Canola | nucleus | 22.94 | 14.45 |
| CDY29348 | Canola | nucleus | 11.01 | 10.86 |
| CDY59239 | Canola | nucleus | 11.01 | 10.86 |
| CDY16502 | Canola | nucleus | 11.01 | 10.67 |
| CDY68372 | Canola | nucleus | 6.88 | 8.93 |
| Solyc08g068540.2.1 | Tomato | nucleus | 19.72 | 8.62 |
| Solyc07g054630.2.1 | Tomato | nucleus | 19.72 | 7.44 |
| PGSC0003DMT400047299 | Potato | nucleus | 13.3 | 5.46 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | GO:A0A078FU24 | UniProt:A0A078FU24 | InterPro:B3_DNA-bd | EnsemblPlants:CDY16501 |
| ProteinID:CDY16501 | ProteinID:CDY16501.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00091100001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31674 |
| PANTHER:PTHR31674:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EEA198 | SEG:seg | : |
Description
BnaA08g02660DBnaA08g02660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FU24]
Coordinates
chrLK032064:+:508660..509511
Molecular Weight (calculated)
25109.1 Da
IEP (calculated)
7.948
GRAVY (calculated)
-0.412
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSNMNTSRR SSARITSAAT QRQQKPEPEP GVKKFIKMIL LSTIKEKMMK IPARFVRLGP KLTDTVTIQT PVGFKRSIRI KRTGDQVWFE KGWNEFAEAH
101: SISQGHFLYF CYEGNSSFRV MIFDVSASEI DYPMDKVHCI ESDDEVMEVM DTDDEEGFTR VDSSDNDSSD EEAIDLEKLL KKKLRVNVKS ETINIGNVSR
201: LKLKSCGFFF FFFFFSCV
101: SISQGHFLYF CYEGNSSFRV MIFDVSASEI DYPMDKVHCI ESDDEVMEVM DTDDEEGFTR VDSSDNDSSD EEAIDLEKLL KKKLRVNVKS ETINIGNVSR
201: LKLKSCGFFF FFFFFSCV
001: MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD
Arabidopsis Description
B3 domain-containing protein At1g49475 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.