Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014191.1-P | Field mustard | mitochondrion, nucleus | 85.85 | 85.85 |
| CDY16501 | Canola | nucleus | 74.06 | 72.02 |
| AT1G49475.1 | Thale cress | mitochondrion, nucleus | 50.47 | 56.32 |
| CDX99294 | Canola | nucleus | 40.57 | 41.55 |
| CDX92291 | Canola | nucleus, plastid | 38.21 | 38.21 |
| CDY22996 | Canola | nucleus | 25.0 | 16.21 |
| CDX82319 | Canola | nucleus | 24.06 | 15.5 |
| CDY18562 | Canola | nucleus | 24.53 | 15.2 |
| CDX95476 | Canola | nucleus | 24.06 | 14.87 |
| CDX92293 | Canola | nucleus | 23.58 | 14.45 |
| CDX99291 | Canola | nucleus | 23.58 | 14.45 |
| CDY16502 | Canola | nucleus | 11.32 | 10.67 |
| CDY29348 | Canola | nucleus | 10.38 | 9.95 |
| CDY59239 | Canola | nucleus | 10.38 | 9.95 |
| Solyc08g068540.2.1 | Tomato | nucleus | 21.7 | 9.22 |
| CDY68372 | Canola | nucleus | 7.08 | 8.93 |
| Solyc07g054630.2.1 | Tomato | nucleus | 21.7 | 7.96 |
| PGSC0003DMT400047299 | Potato | nucleus | 14.15 | 5.65 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | GO:A0A078CMI2 | InterPro:B3_DNA-bd | EnsemblPlants:CDX77244 | ProteinID:CDX77244 |
| ProteinID:CDX77244.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00127927001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31674 |
| PANTHER:PTHR31674:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EE00AE | SEG:seg | : |
Description
BnaC08g02890D
Coordinates
chrLK031810:-:163997..165191
Molecular Weight (calculated)
24263.8 Da
IEP (calculated)
6.532
GRAVY (calculated)
-0.509
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTRRASSR ITSAASQRRQ KPEPEPAVKK FIKIILPSTI KEKMMKIPAR FVRLGPKLTD TVTIQTPVGF KRSIRIKRTG NEVWFDNGWS EFAEAHSISE
101: GHFLYFCYEG NSSFRVMIFD VSASEIDYPM DKVHVIESDD DEVMEVMDTD DEEGFTRVDS SDNDSSDEEA IDLEKLLKKK PRVNVKSETI NIGNVSRHKL
201: KSSGFFFFFS CV
101: GHFLYFCYEG NSSFRVMIFD VSASEIDYPM DKVHVIESDD DEVMEVMDTD DEEGFTRVDS SDNDSSDEEA IDLEKLLKKK PRVNVKSETI NIGNVSRHKL
201: KSSGFFFFFS CV
001: MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD
Arabidopsis Description
B3 domain-containing protein At1g49475 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB4]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.