CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92293	Canola	nucleus	98.84	98.84
CDX95476	Canola	nucleus	88.44	89.21
CDY22996	Canola	nucleus	71.97	76.15
CDX82319	Canola	nucleus	71.97	75.68
CDY18562	Canola	nucleus	72.83	73.68
CDY68372	Canola	nucleus	34.1	70.24
AT3G18990.2	Thale cress	nucleus	72.25	67.2
CDY29348	Canola	nucleus	37.57	58.82
CDY59239	Canola	nucleus	37.57	58.82
CDY16502	Canola	nucleus	37.28	57.33
KRG89212	Soybean	nucleus	50.29	40.0
KRH24554	Soybean	nucleus	50.58	39.68
KRH29559	Soybean	nucleus	49.13	39.44
VIT_03s0063g01450.t01	Wine grape	nucleus	39.31	38.31
KRH49567	Soybean	mitochondrion, nucleus	50.29	37.18
CDX77244	Canola	mitochondrion, nucleus	14.45	23.58
CDY16501	Canola	nucleus	14.74	23.39
CDX99294	Canola	nucleus	13.87	23.19
CDX92291	Canola	nucleus, plastid	13.58	22.17
Solyc08g068540.2.1	Tomato	nucleus	22.83	15.83
Solyc07g054630.2.1	Tomato	nucleus	24.28	14.53
PGSC0003DMT400047299	Potato	nucleus	18.21	11.86

Protein Annotations

EnsemblPlants:CDX99291	EnsemblPlantsGene:GSBRNA2T00107563001	Gene3D:2.40.330.10	GO:A0A078EDR5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX99291	ProteinID:CDX99291.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EE5F94	MapMan:15.5.5.2	:

Description

BnaC05g34060D

Coordinates

chrLK031909:+:944111..946796

Molecular Weight (calculated)

39561.0 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.436

Length

346 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADSNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH
101: SEINYHSSAL MDTAHTHLKR ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT PTPKVTKKRG RKKKNAVPEE
201: VNSSAPRDDD PESRSKFYES ASARKRTVTA EERERAINAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA
301: GRAKFSQGWY EFTLENNLGE GDVCVFELLR TRDFVLKVTA YRVNAI

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.