Factsheet for VIT_03s0063g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68372	Canola	nucleus	19.72	41.67
CDX82319	Canola	nucleus	38.31	41.34
CDY22996	Canola	nucleus	37.46	40.67
CDY18562	Canola	nucleus	39.15	40.64
Bra037544.1-P	Field mustard	nucleus	38.87	40.35
CDX95476	Canola	nucleus	38.31	39.65
CDX99291	Canola	nucleus	38.31	39.31
CDX92293	Canola	nucleus	38.03	39.02
AT3G18990.2	Thale cress	nucleus	39.44	37.63
Bra022376.1-P	Field mustard	nucleus	37.75	36.41
Bra032286.1-P	Field mustard	nucleus	21.13	34.09
AT1G49480.2	Thale cress	nucleus	21.69	34.07
CDY29348	Canola	nucleus	21.13	33.94
CDY59239	Canola	nucleus	20.85	33.48
CDY16502	Canola	nucleus	21.13	33.33
KRH29559	Soybean	nucleus	39.15	32.25
Bra014192.1-P	Field mustard	nucleus	19.15	31.92
KRG89212	Soybean	nucleus	38.31	31.26
KRH24554	Soybean	nucleus	38.31	30.84
KRH49567	Soybean	mitochondrion, nucleus	38.87	29.49
Solyc08g068540.2.1	Tomato	nucleus	24.79	17.64
Solyc07g054630.2.1	Tomato	nucleus	26.76	16.44
VIT_07s0255g00070.t01	Wine grape	nucleus	15.77	16.0
PGSC0003DMT400047299	Potato	nucleus	21.13	14.12

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	ProteinID:CBI32503	ProteinID:CBI32503.3	UniProt:D7TPT0
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN596006	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI00015C87A5	ArrayExpress:VIT_03s0063g01450	EnsemblPlantsGene:VIT_03s0063g01450	EnsemblPlants:VIT_03s0063g01450.t01	:

Description

No Description!

Coordinates

chr3:+:4879760..4881742

Molecular Weight (calculated)

40883.3 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.518

Length

355 amino acids

Sequence
(BLAST)

001: MPEQETLDHS HCRRPSSQPT RSLLFYKLIV SSVLQAKRLR IPQKFVKKSG DQLSAVTTLT LPNGGVWYVG LTKADNKFWF YHGWHEFVEY YSIHVGYFLI
101: FRYEGNSNFN VNIFDLTASE INYPSNNLRN SEKTSHGKQC PASDGEEMND DDDSVEILGS ASPVSLRSKV FDECIDQQPL GKNYNENLHL AKDANSLQVT
201: IRSSRDIGIQ FNSSELTNSE CKRWRVVTME EKKRALHAAE MFQPSNPFCR VILRRSYVHE RFLLHMPSRF AEKYLNGVSK FIKLQTSDGK QWHVRCLSGE
301: SRVKLSKGWT EFVKDNNLEE GDVCVFELIN MEDVVLKVSI FRVLDDARVE TQSSN

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.