CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82319	Canola	nucleus	83.49	82.98
CDX95476	Canola	nucleus	78.59	74.93
CDX99291	Canola	nucleus	76.15	71.97
CDX92293	Canola	nucleus	75.84	71.68
CDY18562	Canola	nucleus	74.31	71.05
CDY68372	Canola	nucleus	35.78	69.64
AT3G18990.2	Thale cress	nucleus	73.39	64.52
CDY29348	Canola	nucleus	39.14	57.92
CDY59239	Canola	nucleus	39.14	57.92
CDY16502	Canola	nucleus	38.23	55.56
KRG89212	Soybean	nucleus	53.52	40.23
KRH24554	Soybean	nucleus	54.13	40.14
KRH29559	Soybean	nucleus	52.6	39.91
VIT_03s0063g01450.t01	Wine grape	nucleus	40.67	37.46
KRH49567	Soybean	mitochondrion, nucleus	52.91	36.97
CDX77244	Canola	mitochondrion, nucleus	16.21	25.0
CDY16501	Canola	nucleus	16.21	24.31
CDX99294	Canola	nucleus	14.37	22.71
CDX92291	Canola	nucleus, plastid	13.46	20.75
Solyc08g068540.2.1	Tomato	nucleus	25.38	16.63
Solyc07g054630.2.1	Tomato	nucleus	27.22	15.4
PGSC0003DMT400047299	Potato	nucleus	20.8	12.81

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	GO:A0A078GCA6	UniProt:A0A078GCA6	InterPro:B3_DNA-bd	EnsemblPlants:CDY22996
ProteinID:CDY22996	ProteinID:CDY22996.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00021429001	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920
PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EDF1FA	SEG:seg	:

Description

BnaC03g40730DBnaC03g40730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCA6]

Coordinates

chrLK032138:+:557419..559887

Molecular Weight (calculated)

37996.0 Da

IEP (calculated)

9.824

GRAVY (calculated)

-0.615

Length

327 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVRRF KDELSVAVAL TVPDGHVWRV GLRKADNNNK IWFQDGWQEF VHRYSIRIGY LLVFRYEGNS AFSVYIYNLP
101: HSEINYHSTG LMDSANHFKR PRLFEDLEDE DAETLHTTTS AIQSFFTGPV KPEEATPTQT SKVPKKRGRK KKKNADHPEE VNSSAPRDDD PESRSKFYES
201: ASARKRTVNA EERERAINAA KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA GRAKFSQGWY EFTVENNLGE
301: GDVCAFELLR TRDFVLKVTA FRVNEYV

Best Arabidopsis Sequence Match ( AT1G49480.1 )
(BLAST)

001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV

Arabidopsis Description

REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.