Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18562 | Canola | nucleus | 85.48 | 92.98 |
| Bra037544.1-P | Field mustard | nucleus | 85.22 | 92.69 |
| CDX95476 | Canola | nucleus | 69.09 | 74.93 |
| CDY22996 | Canola | nucleus | 64.52 | 73.39 |
| CDX82319 | Canola | nucleus | 63.98 | 72.34 |
| Bra022376.1-P | Field mustard | nucleus | 71.51 | 72.28 |
| CDX99291 | Canola | nucleus | 67.2 | 72.25 |
| CDX92293 | Canola | nucleus | 66.94 | 71.97 |
| AT1G49480.2 | Thale cress | nucleus | 35.22 | 57.96 |
| KRH24554 | Soybean | nucleus | 51.08 | 43.08 |
| KRG89212 | Soybean | nucleus | 49.46 | 42.3 |
| KRH29559 | Soybean | nucleus | 48.92 | 42.23 |
| VIT_03s0063g01450.t01 | Wine grape | nucleus | 37.63 | 39.44 |
| KRH49567 | Soybean | mitochondrion, nucleus | 48.39 | 38.46 |
| AT1G49475.1 | Thale cress | mitochondrion, nucleus | 13.44 | 26.32 |
| AT4G01580.1 | Thale cress | mitochondrion | 12.63 | 24.74 |
| AT3G18960.1 | Thale cress | nucleus | 12.9 | 22.97 |
| Solyc08g068540.2.1 | Tomato | nucleus | 22.58 | 16.83 |
| Solyc07g054630.2.1 | Tomato | nucleus | 24.19 | 15.57 |
| PGSC0003DMT400047299 | Potato | nucleus | 18.28 | 12.81 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | EntrezGene:821432 | UniProt:A0A1I9LQ83 | ProteinID:ANM64741.1 | ArrayExpress:AT3G18990 |
| EnsemblPlantsGene:AT3G18990 | RefSeq:AT3G18990 | TAIR:AT3G18990 | RefSeq:AT3G18990-TAIR-G | EnsemblPlants:AT3G18990.2 | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 |
| RefSeq:NP_001326749.1 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31920 | PANTHER:PTHR31920:SF22 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI000848A5C2 | Symbol:VRN1 | SEG:seg | : | : |
Description
VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
Coordinates
chr3:-:6548127..6552034
Molecular Weight (calculated)
42518.5 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.505
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.