CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99291	Canola	nucleus	89.21	88.44
CDX92293	Canola	nucleus	88.92	88.15
CDY22996	Canola	nucleus	74.93	78.59
CDX82319	Canola	nucleus	74.34	77.51
CDY18562	Canola	nucleus	76.09	76.32
CDY68372	Canola	nucleus	34.99	71.43
AT3G18990.2	Thale cress	nucleus	74.93	69.09
CDY29348	Canola	nucleus	38.48	59.73
CDY59239	Canola	nucleus	38.48	59.73
CDY16502	Canola	nucleus	38.19	58.22
KRH24554	Soybean	nucleus	53.06	41.27
KRG89212	Soybean	nucleus	51.6	40.69
KRH29559	Soybean	nucleus	51.02	40.6
VIT_03s0063g01450.t01	Wine grape	nucleus	39.65	38.31
KRH49567	Soybean	mitochondrion, nucleus	51.31	37.61
CDX77244	Canola	mitochondrion, nucleus	14.87	24.06
CDY16501	Canola	nucleus	14.87	23.39
CDX99294	Canola	nucleus	13.99	23.19
CDX92291	Canola	nucleus, plastid	13.7	22.17
Solyc08g068540.2.1	Tomato	nucleus	23.03	15.83
Solyc07g054630.2.1	Tomato	nucleus	24.49	14.53
PGSC0003DMT400047299	Potato	nucleus	18.37	11.86

Protein Annotations

EnsemblPlants:CDX95476	EnsemblPlantsGene:GSBRNA2T00101258001	Gene3D:2.40.330.10	GO:A0A078E2A3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX95476	ProteinID:CDX95476.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EDFAB0	MapMan:15.5.5.2	:

Description

BnaC01g33680D

Coordinates

chrLK031889:+:508520..511628

Molecular Weight (calculated)

39640.8 Da

IEP (calculated)

9.269

GRAVY (calculated)

-0.583

Length

343 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH
101: SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSPL YPSQHPETTA HANKGHTSSA IQSFFAEPPV KAEETTPTPK VPKKRGRKKK NADPEEINSS
201: APRDDDPENR SKFYESASAR KRTVTAEERE RAINAAKTFE PTNPFFRVVL RPSYLYRGCI MYLPSGFAEK YLSGISGFIK VQLGEKQWPV RCLYKAGRAK
301: FSQGWYEFTL ENNLGEGDVC VFELLRTRDF VLNVTAFRVN EYV

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.