Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G18960.1 | CDX73496 | AT3G54220.1 | 19228333 |
AT3G18960.1 | CDX78219 | AT3G54220.1 | 19228333 |
AT3G18960.1 | CDY44770 | AT5G08330.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX92291 | Canola | nucleus, plastid | 64.73 | 63.21 |
AT3G18960.1 | Thale cress | nucleus | 57.0 | 56.46 |
AT4G01580.1 | Thale cress | mitochondrion | 47.83 | 52.11 |
CDX77244 | Canola | mitochondrion, nucleus | 41.55 | 40.57 |
CDY16501 | Canola | nucleus | 34.3 | 32.57 |
CDX82319 | Canola | nucleus | 24.15 | 15.2 |
CDY18562 | Canola | nucleus | 24.15 | 14.62 |
CDY22996 | Canola | nucleus | 22.71 | 14.37 |
CDX95476 | Canola | nucleus | 23.19 | 13.99 |
CDX99291 | Canola | nucleus | 23.19 | 13.87 |
CDX92293 | Canola | nucleus | 22.71 | 13.58 |
Solyc08g068540.2.1 | Tomato | nucleus | 21.26 | 8.82 |
CDY29348 | Canola | nucleus | 9.18 | 8.6 |
CDY59239 | Canola | nucleus | 8.7 | 8.14 |
Solyc07g054630.2.1 | Tomato | nucleus | 22.22 | 7.96 |
CDY16502 | Canola | nucleus | 7.73 | 7.11 |
CDY68372 | Canola | nucleus | 5.31 | 6.55 |
PGSC0003DMT400047299 | Potato | nucleus | 13.04 | 5.08 |
Protein Annotations
EnsemblPlants:CDX99294 | EnsemblPlantsGene:GSBRNA2T00107566001 | Gene3D:2.40.330.10 | GO:A0A078EEN0 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 |
PANTHER:PTHR31674 | PANTHER:PTHR31674:SF1 | PFAM:PF02362 | PFscan:PS50863 | ProteinID:CDX99294 | ProteinID:CDX99294.1 |
SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EE66CE | MapMan:15.5.5.2 | : | : |
Description
BnaC05g34090D
Coordinates
chrLK031909:-:952733..953705
Molecular Weight (calculated)
23612.0 Da
IEP (calculated)
5.742
GRAVY (calculated)
-0.514
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTTRQTKAR VTTASHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE
101: GHFLFFDYKG NSTFSVMIFN VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL NDVDEINSIK LLEEEEGKRV
201: FRGQQFF
101: GHFLFFDYKG NSTFSVMIFN VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL NDVDEINSIK LLEEEEGKRV
201: FRGQQFF
001: MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
Arabidopsis Description
B3 domain-containing protein At3g18960 [Source:UniProtKB/Swiss-Prot;Acc:Q84R27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.