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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • nucleus 3
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73496
CDX78219
CDY44770

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92291 Canola nucleus, plastid 64.73 63.21
AT3G18960.1 Thale cress nucleus 57.0 56.46
AT4G01580.1 Thale cress mitochondrion 47.83 52.11
CDX77244 Canola mitochondrion, nucleus 41.55 40.57
CDY16501 Canola nucleus 34.3 32.57
CDX82319 Canola nucleus 24.15 15.2
CDY18562 Canola nucleus 24.15 14.62
CDY22996 Canola nucleus 22.71 14.37
CDX95476 Canola nucleus 23.19 13.99
CDX99291 Canola nucleus 23.19 13.87
CDX92293 Canola nucleus 22.71 13.58
Solyc08g068540.2.1 Tomato nucleus 21.26 8.82
CDY29348 Canola nucleus 9.18 8.6
CDY59239 Canola nucleus 8.7 8.14
Solyc07g054630.2.1 Tomato nucleus 22.22 7.96
CDY16502 Canola nucleus 7.73 7.11
CDY68372 Canola nucleus 5.31 6.55
PGSC0003DMT400047299 Potato nucleus 13.04 5.08
Protein Annotations
EnsemblPlants:CDX99294EnsemblPlantsGene:GSBRNA2T00107566001Gene3D:2.40.330.10GO:A0A078EEN0GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:B3_DNA-bdInterPro:DNA-bd_pseudobarrel_sfInterPro:IPR003340InterPro:IPR015300
PANTHER:PTHR31674PANTHER:PTHR31674:SF1PFAM:PF02362PFscan:PS50863ProteinID:CDX99294ProteinID:CDX99294.1
SMART:SM01019SUPFAM:SSF101936UniParc:UPI0004EE66CEMapMan:15.5.5.2::
Description
BnaC05g34090D
Coordinates
chrLK031909:-:952733..953705
Molecular Weight (calculated)
23612.0 Da
IEP (calculated)
5.742
GRAVY (calculated)
-0.514
Length
207 amino acids
Sequence
(BLAST)
001: MVTTRQTKAR VTTASHRRPQ PEPDSSVKKF FKVVLPSTVK RNMLMIPPRF VILQGSTLSE FVTLETPVGF RRSIKLKRIG EEIWLQGGWS EFAEAHSISE
101: GHFLFFDYKG NSTFSVMIFN VSACEIDYPL DAVHISDSDD EVMDVTDEGF LGTQGTRRND QGGGTNPKKR PRDDEFDKIL NDVDEINSIK LLEEEEGKRV
201: FRGQQFF
Best Arabidopsis Sequence Match ( AT3G18960.1 )
(BLAST)
001: MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
Arabidopsis Description
B3 domain-containing protein At3g18960 [Source:UniProtKB/Swiss-Prot;Acc:Q84R27]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.