Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G01580.1 | Thale cress | mitochondrion | 58.85 | 64.74 |
| CDX99294 | Canola | nucleus | 56.46 | 57.0 |
| CDX92291 | Canola | nucleus, plastid | 46.41 | 45.75 |
| Bra022374.1-P | Field mustard | nucleus, plastid | 46.41 | 45.33 |
| AT1G49475.1 | Thale cress | mitochondrion, nucleus | 33.01 | 36.32 |
| AT3G18990.2 | Thale cress | nucleus | 22.97 | 12.9 |
| Solyc08g068540.2.1 | Tomato | nucleus | 22.01 | 9.22 |
| Solyc07g054630.2.1 | Tomato | nucleus | 21.05 | 7.61 |
| AT1G49480.2 | Thale cress | nucleus | 8.13 | 7.52 |
| PGSC0003DMT400047299 | Potato | nucleus | 14.83 | 5.84 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | EntrezGene:821429 | UniProt:A0A178VGT7 | ProteinID:AEE76174.1 | EMBL:AK229681 |
| ArrayExpress:AT3G18960 | EnsemblPlantsGene:AT3G18960 | RefSeq:AT3G18960 | TAIR:AT3G18960 | RefSeq:AT3G18960-TAIR-G | EnsemblPlants:AT3G18960.1 |
| TAIR:AT3G18960.1 | Unigene:At.66475 | InterPro:B3_DNA-bd | ProteinID:BAB01692.1 | EMBL:BT006139 | EMBL:BT008541 |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 |
| InterPro:IPR015300 | RefSeq:NP_188526.2 | ProteinID:OAP05627.1 | PFAM:PF02362 | PO:PO:0000293 | PFscan:PS50863 |
| PANTHER:PTHR31674 | PANTHER:PTHR31674:SF1 | UniProt:Q84R27 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI000018CEF5 |
| SEG:seg | : | : | : | : | : |
Description
B3 domain-containing protein At3g18960 [Source:UniProtKB/Swiss-Prot;Acc:Q84R27]
Coordinates
chr3:+:6542456..6543676
Molecular Weight (calculated)
24092.8 Da
IEP (calculated)
7.835
GRAVY (calculated)
-0.649
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.