Factsheet for Solyc08g068540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc04g009180.1.1
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18960.1	Solyc10g074680.1.1	AT3G54220.1	19228333
AT3G18960.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT3G18960.1	Solyc04g009180.1.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047299	Potato	nucleus	68.14	64.03
Solyc07g054630.2.1	Tomato	nucleus	73.15	63.15
CDY22996	Canola	nucleus	16.63	25.38
CDX82319	Canola	nucleus	16.43	24.92
VIT_03s0063g01450.t01	Wine grape	nucleus	17.64	24.79
Solyc01g034190.1.1	Tomato	cytoskeleton, cytosol, nucleus	4.81	24.74
AT4G01580.1	Thale cress	mitochondrion	9.42	24.74
CDY18562	Canola	nucleus	16.23	23.68
Bra037544.1-P	Field mustard	nucleus	16.23	23.68
Solyc04g015500.2.1	Tomato	cytosol	10.22	23.5
CDX95476	Canola	nucleus	15.83	23.03
CDX99291	Canola	nucleus	15.83	22.83
CDX92291	Canola	nucleus, plastid	9.62	22.64
AT1G49475.1	Thale cress	mitochondrion, nucleus	8.62	22.63
AT3G18990.2	Thale cress	nucleus	16.83	22.58
Solyc02g065350.2.1	Tomato	mitochondrion	14.83	22.36
CDX92293	Canola	nucleus	15.43	22.25
CDY68372	Canola	nucleus	7.41	22.02
AT3G18960.1	Thale cress	nucleus	9.22	22.01
Solyc03g042510.1.1	Tomato	nucleus	8.42	21.76
CDX77244	Canola	mitochondrion, nucleus	9.22	21.7
Bra022374.1-P	Field mustard	nucleus, plastid	9.22	21.5
CDX99294	Canola	nucleus	8.82	21.26
Bra022376.1-P	Field mustard	nucleus	15.43	20.92
Bra014191.1-P	Field mustard	mitochondrion, nucleus	8.82	20.75
KRH24554	Soybean	nucleus	18.24	20.63
Bra032286.1-P	Field mustard	nucleus	9.02	20.45
CDY29348	Canola	nucleus	9.02	20.36
CDY59239	Canola	nucleus	9.02	20.36
KRH29559	Soybean	nucleus	17.43	20.19
CDY16501	Canola	nucleus	8.62	19.72
CDY16502	Canola	nucleus	8.82	19.56
KRG89212	Soybean	nucleus	16.63	19.08
AT1G49480.2	Thale cress	nucleus	8.62	19.03
Solyc03g044110.1.1	Tomato	nucleus	12.02	18.58
Solyc01g015210.1.1	Tomato	nucleus	10.42	18.31
Bra014192.1-P	Field mustard	nucleus	7.82	18.31
Solyc03g042500.1.1	Tomato	mitochondrion	7.41	18.23
KRH49567	Soybean	mitochondrion, nucleus	16.63	17.73
Solyc03g043570.1.1	Tomato	cytosol	4.61	17.29
Solyc11g045450.1.1	Tomato	cytosol	10.02	16.84
Solyc03g043580.1.1	Tomato	cytosol	10.82	16.72
Solyc08g029090.2.1	Tomato	nucleus	16.03	13.7
Solyc05g017730.1.1	Tomato	cytosol	2.4	10.08
Solyc02g021260.1.1	Tomato	nucleus, plasma membrane	16.03	6.07

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CM78	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc08g068540.2	EnsemblPlants:Solyc08g068540.2.1
UniParc:UPI000276CA9F	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:57683896..57687765

Molecular Weight (calculated)

56983.6 Da

IEP (calculated)

9.803

GRAVY (calculated)

-0.753

Length

499 amino acids

Sequence
(BLAST)

001: MESCSNSYSA GSFYVIVEPS VMDDRQLRLP DKFVQEHGDE LLDTVKIIVP TDDFWCVGLK KAGKMIWLHD GWQEFMEHHS VNCWYFLLFK YGQTSCFNVH
101: IFDLAATEID YQLRSHGNAK SRDVAQELSH RKDKIVGDKG FTSSIEIVDL LETEQGPESS AKSSELLHRA KRRKIASGKI KITRCYETRS RTNKLHDNGQ
201: LLNAKNLNIS GNGSLTKPVG GKSVRRSIKT PIHSAMATGD TRKSFTSKQR EKSLGRGRYD RRERAQQKIL EKYNVERNYI LNIPVEFVRK YMPKTSELIE
301: LQDTDGNKWK VRCIRRKLRV LLSKGWLNFV TDNSLLVGDV CVFELLKDVQ AVELILKVHM FRNRVEENSK NLHTGSLSEP TLSTGKNCIL QFDESNHTKS
401: SDAFKPLSSD RTNHKTDTEN SFGQQQEKSV VHGSSGNRRK RGRPRDAEAN TDTENSSGQQ EEKSVVHGSL VIVVKEDDQG MQKQTLIQRI HPDSKRRNP

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.