Factsheet for Bra014191.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77244	Canola	mitochondrion, nucleus	85.85	85.85
AT1G49475.1	Thale cress	mitochondrion, nucleus	47.17	52.63
Bra022374.1-P	Field mustard	nucleus, plastid	40.57	40.19
Bra037544.1-P	Field mustard	nucleus	23.11	14.33
Bra022376.1-P	Field mustard	nucleus	22.17	12.77
Bra014192.1-P	Field mustard	nucleus	10.38	10.33
Bra032286.1-P	Field mustard	nucleus	10.38	10.0
Solyc08g068540.2.1	Tomato	nucleus	20.75	8.82
Solyc07g054630.2.1	Tomato	nucleus	20.75	7.61
PGSC0003DMT400047299	Potato	nucleus	12.26	4.9

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra014191	EnsemblPlants:Bra014191.1	EnsemblPlants:Bra014191.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4DCH7	PFAM:PF02362	PANTHER:PTHR31674	PANTHER:PTHR31674:SF1	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000254636B	SEG:seg	:	:	:	:

Description

AT1G49475 (E=9e-048) | DNA binding / transcription factor

Coordinates

chrA08:-:2678459..2679216

Molecular Weight (calculated)

23847.4 Da

IEP (calculated)

6.291

GRAVY (calculated)

-0.391

Length

212 amino acids

Sequence
(BLAST)

001: MNTTRRASAR ITSAASQRRQ KPEPEPAVKK FIKVILPSTI KEKMMKIPAR FVRLGPKLTD TVTIQTPVGF KRSIGIKRTG NEVWVDNGCS EFAEAHSISE
101: GHFLYFCSEG NSSFRVMIFD VSASEIDYPM DKVHVIESDD DEVMEVMDTD DGEGFTRVDS SDNDSSDEEA IDLEKLLKKK PRVNVKFETI NIGNVSRLKL
201: KSCGFFSFFS CV

Best Arabidopsis Sequence Match ( AT1G49475.1 )
(BLAST)

001: MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD

Arabidopsis Description

B3 domain-containing protein At1g49475 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.