Factsheet for Bra037544.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18562	Canola	nucleus	99.71	99.71
AT3G18990.2	Thale cress	nucleus	92.69	85.22
Bra022376.1-P	Field mustard	nucleus	78.07	72.55
Bra032286.1-P	Field mustard	nucleus	37.72	58.64
Bra014192.1-P	Field mustard	nucleus	33.63	53.99
KRH24554	Soybean	nucleus	54.68	42.4
KRH29559	Soybean	nucleus	52.34	41.53
KRG89212	Soybean	nucleus	52.63	41.38
VIT_03s0063g01450.t01	Wine grape	nucleus	40.35	38.87
KRH49567	Soybean	mitochondrion, nucleus	51.75	37.82
Bra014191.1-P	Field mustard	mitochondrion, nucleus	14.33	23.11
Bra022374.1-P	Field mustard	nucleus, plastid	13.74	21.96
Solyc08g068540.2.1	Tomato	nucleus	23.68	16.23
Solyc07g054630.2.1	Tomato	nucleus	25.44	15.05
PGSC0003DMT400047299	Potato	nucleus	19.01	12.24

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra037544	EnsemblPlants:Bra037544.1	EnsemblPlants:Bra037544.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4F8Y2	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002544E64	SEG:seg	:	:	:

Description

AT3G18990 (E=3e-169) VRN1, REM39 | VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor

Coordinates

chrA01:+:21792105..21794707

Molecular Weight (calculated)

39560.8 Da

IEP (calculated)

9.265

GRAVY (calculated)

-0.571

Length

342 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH
101: SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSSL YPLQHPETTG HANKGHTSSA IQSFFAEPVK AEETTPTPKV PKKRGRKKKN ADPEEINSSA
201: PRDDDPENRS KFYESASARK RTVTAEERER AINAAKTFEP TNPFFRVVLR PSYLYRGCIM YLPSGFAEKY LSGISGFIKV QLGEKQWPVR CLYKAGRAKF
301: SQGWYEFTLE NDLGEGDVCV FELLRTRDFV LKVTAFRVNE YV

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.