Factsheet for Bra022376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92293	Canola	nucleus	88.59	94.22
Bra037544.1-P	Field mustard	nucleus	72.55	78.07
AT3G18990.2	Thale cress	nucleus	72.28	71.51
Bra032286.1-P	Field mustard	nucleus	34.78	58.18
Bra014192.1-P	Field mustard	nucleus	31.79	54.93
KRG89212	Soybean	nucleus	47.83	40.46
KRH24554	Soybean	nucleus	47.83	39.91
KRH29559	Soybean	nucleus	46.74	39.91
VIT_03s0063g01450.t01	Wine grape	nucleus	36.41	37.75
KRH49567	Soybean	mitochondrion, nucleus	47.28	37.18
Bra014191.1-P	Field mustard	mitochondrion, nucleus	12.77	22.17
Bra022374.1-P	Field mustard	nucleus, plastid	11.96	20.56
Solyc08g068540.2.1	Tomato	nucleus	20.92	15.43
Solyc07g054630.2.1	Tomato	nucleus	22.28	14.19
PGSC0003DMT400047299	Potato	nucleus	16.85	11.68

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra022376	EnsemblPlants:Bra022376.1	EnsemblPlants:Bra022376.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003340	InterPro:IPR015300	UniProt:M4E0S9	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920
PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	TMHMM:TMhelix	UniParc:UPI0002547F82	SEG:seg

Description

AT3G18990 (E=1e-080) VRN1, REM39 | VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor

Coordinates

chrA05:+:18097192..18099356

Molecular Weight (calculated)

41941.1 Da

IEP (calculated)

9.561

GRAVY (calculated)

-0.318

Length

368 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSNF KDELSVAVAL TVPDGHVWRV GLRKSDNNKI YFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH
101: SEINYHSSAL MDTAHTHLKR ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT PTPKVTKKRG RKKKNAVPGK
201: AFFLSCFILG LIVMIGVIHP EEVNSSAPRD DDPESRSKFY ESASARKRTV TAEERERAIN AAKTFEPTNP FFRVVLRPSY LYRGCIMYLP SGFAEKYLSG
301: ISGFIKVQLG EKQWPVRCLY KAGRAKFSQG WYEFTLENNL GEGDVCVFEL LRTRDFVLKV TAYRVNSI

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.