Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra007056.1-P | |
| Bra028662.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G18960.1 | Bra007056.1-P | AT3G54220.1 | 19228333 |
| AT3G18960.1 | Bra028662.1-P | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92291 | Canola | nucleus, plastid | 86.45 | 87.26 |
| AT4G01580.1 | Thale cress | mitochondrion | 41.59 | 46.84 |
| AT3G18960.1 | Thale cress | nucleus | 45.33 | 46.41 |
| Bra014191.1-P | Field mustard | mitochondrion, nucleus | 40.19 | 40.57 |
| Bra037544.1-P | Field mustard | nucleus | 21.96 | 13.74 |
| Bra022376.1-P | Field mustard | nucleus | 20.56 | 11.96 |
| Solyc08g068540.2.1 | Tomato | nucleus | 21.5 | 9.22 |
| Bra032286.1-P | Field mustard | nucleus | 8.88 | 8.64 |
| Bra014192.1-P | Field mustard | nucleus | 8.41 | 8.45 |
| Solyc07g054630.2.1 | Tomato | nucleus | 21.03 | 7.79 |
| PGSC0003DMT400047299 | Potato | nucleus | 14.02 | 5.65 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | EnsemblPlantsGene:Bra022374 | EnsemblPlants:Bra022374.1 | EnsemblPlants:Bra022374.1-P |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:M4E0S7 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31674 | PANTHER:PTHR31674:SF1 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI0002547F84 | SEG:seg | : | : | : |
Description
AT3G18960 (E=5e-073) | transcriptional factor B3 family protein
Coordinates
chrA05:-:18101825..18102768
Molecular Weight (calculated)
24382.5 Da
IEP (calculated)
5.359
GRAVY (calculated)
-0.664
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTTRQKKAG VTTASHRRPP SEPDSSVKKF WNVVLPSTMK RNMMMIPPKF VNLQGSTLSE FVTVETPVGF RRSIKLKRIG EEIWLHGGWS EFAEAHSISE
101: GHFLFFDYKG NSTFSVMIFH VSACEIDYPL DEVHISDSDS DSDDDVMDVT DEGFHGTQAT RRNDQSVNGG GTEHNRTKRS RDDEFDKILN DLDGIKLLEE
201: EEDGKRVFRG QQFF
101: GHFLFFDYKG NSTFSVMIFH VSACEIDYPL DEVHISDSDS DSDDDVMDVT DEGFHGTQAT RRNDQSVNGG GTEHNRTKRS RDDEFDKILN DLDGIKLLEE
201: EEDGKRVFRG QQFF
001: MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG
Arabidopsis Description
B3 domain-containing protein At3g18960 [Source:UniProtKB/Swiss-Prot;Acc:Q84R27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.