CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73496
CDX78219
CDY44770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18960.1	CDX73496	AT3G54220.1	19228333
AT3G18960.1	CDX78219	AT3G54220.1	19228333
AT3G18960.1	CDY44770	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022374.1-P	Field mustard	nucleus, plastid	87.26	86.45
CDX99294	Canola	nucleus	63.21	64.73
AT4G01580.1	Thale cress	mitochondrion	41.98	46.84
AT3G18960.1	Thale cress	nucleus	45.75	46.41
CDX77244	Canola	mitochondrion, nucleus	38.21	38.21
CDY16501	Canola	nucleus	34.43	33.49
CDX95476	Canola	nucleus	22.17	13.7
CDX99291	Canola	nucleus	22.17	13.58
CDY22996	Canola	nucleus	20.75	13.46
CDY18562	Canola	nucleus	21.7	13.45
CDX82319	Canola	nucleus	20.75	13.37
CDX92293	Canola	nucleus	21.7	13.29
Solyc08g068540.2.1	Tomato	nucleus	22.64	9.62
CDY29348	Canola	nucleus	8.96	8.6
CDY59239	Canola	nucleus	8.96	8.6
Solyc07g054630.2.1	Tomato	nucleus	22.17	8.13
CDY68372	Canola	nucleus	6.13	7.74
CDY16502	Canola	nucleus	8.02	7.56
PGSC0003DMT400047299	Potato	nucleus	15.09	6.03

Protein Annotations

EnsemblPlants:CDX92291	EnsemblPlantsGene:GSBRNA2T00154015001	Gene3D:2.40.330.10	GO:A0A078DSP4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR31674	PANTHER:PTHR31674:SF1	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX92291	ProteinID:CDX92291.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EEF3B0	MapMan:15.5.5.2	:

Description

BnaA05g21160D

Coordinates

chrLK031871:+:1300865..1301839

Molecular Weight (calculated)

24240.5 Da

IEP (calculated)

5.911

GRAVY (calculated)

-0.646

Length

212 amino acids

Sequence
(BLAST)

001: MVTTRQKKAG VTTASHRRPP SEPDSSVKKF WNVVLPSTMK RNMMMIPPKF VNLQGSTLSE FVTVETPVGF RRSIKLKRIG EEIWLHGGWS EFAEAHSISE
101: GHFLFFDYKG NSTFSVMIFH VSACEIDYPL DEVHISDSDS DDDVMDVTDE GFRGTQATRR NDQSVNGGGI EHNRKKRARD DEFDKILNDL DGMKLLEEEE
201: DGKRVFRGQQ FF

Best Arabidopsis Sequence Match ( AT3G18960.1 )
(BLAST)

001: MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE
101: GHFLLFEYKE NSSFRVIIFN VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE LDKILHDLDV MNPMHVLKEE
201: EEDKRVFRG

Arabidopsis Description

B3 domain-containing protein At3g18960 [Source:UniProtKB/Swiss-Prot;Acc:Q84R27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.