CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29348	Canola	nucleus	97.29	97.29
Bra032286.1-P	Field mustard	nucleus	95.48	95.91
CDY16502	Canola	nucleus	76.02	74.67
CDY68372	Canola	nucleus	54.75	72.02
AT1G49480.2	Thale cress	nucleus	70.59	69.03
CDY22996	Canola	nucleus	57.92	39.14
CDX95476	Canola	nucleus	59.73	38.48
CDX82319	Canola	nucleus	57.01	38.3
CDY18562	Canola	nucleus	58.82	38.01
CDX99291	Canola	nucleus	58.82	37.57
CDX92293	Canola	nucleus	58.82	37.57
KRG89212	Soybean	nucleus	48.87	24.83
KRH29559	Soybean	nucleus	47.51	24.36
KRH24554	Soybean	nucleus	48.42	24.26
KRH49567	Soybean	mitochondrion, nucleus	48.42	22.86
VIT_03s0063g01450.t01	Wine grape	nucleus	33.48	20.85
CDY16501	Canola	nucleus	10.86	11.01
CDX77244	Canola	mitochondrion, nucleus	9.95	10.38
Solyc08g068540.2.1	Tomato	nucleus	20.36	9.02
CDX92291	Canola	nucleus, plastid	8.6	8.96
CDX99294	Canola	nucleus	8.14	8.7
PGSC0003DMT400047299	Potato	nucleus	20.81	8.66
Solyc07g054630.2.1	Tomato	nucleus	21.72	8.3

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	GO:A0A078J4Z6	UniProt:A0A078J4Z6	InterPro:B3_DNA-bd	EnsemblPlants:CDY59239
ProteinID:CDY59239	ProteinID:CDY59239.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00025755001	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920
PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EB7B13	SEG:seg	:

Description

BnaC05g51360DBnaC05g51360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4Z6]

Coordinates

chrLK033743:-:22162..24199

Molecular Weight (calculated)

25502.2 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.798

Length

221 amino acids

Sequence
(BLAST)

001: MNMDSAHNEF NKRARLFEDR QKEETRVTHP LIPESNAPLN EGYEGSTTTQ SLFTDSKPEE TPKIPKKRGR KKKNPNPEEI NSSTPENSSK FYKSASDRKR
101: TVTAEERERA ISAAKTYEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGIAGFIKLQ LGEKQWPVRC LYKAGRAKFS QGWYEFTLEN NIGEGDVCVF
201: ELLRTRDFVL KVTAFRVTQY V

Best Arabidopsis Sequence Match ( AT1G49480.3 )
(BLAST)

001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV

Arabidopsis Description

REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.