CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037544.1-P	Field mustard	nucleus	99.71	99.71
AT3G18990.2	Thale cress	nucleus	92.98	85.48
CDX95476	Canola	nucleus	76.32	76.09
CDX82319	Canola	nucleus	71.93	74.77
CDY22996	Canola	nucleus	71.05	74.31
CDX99291	Canola	nucleus	73.68	72.83
CDX92293	Canola	nucleus	73.39	72.54
CDY68372	Canola	nucleus	35.38	72.02
CDY29348	Canola	nucleus	38.01	58.82
CDY59239	Canola	nucleus	38.01	58.82
CDY16502	Canola	nucleus	37.72	57.33
KRH24554	Soybean	nucleus	54.97	42.63
KRH29559	Soybean	nucleus	52.63	41.76
KRG89212	Soybean	nucleus	52.92	41.61
VIT_03s0063g01450.t01	Wine grape	nucleus	40.64	39.15
KRH49567	Soybean	mitochondrion, nucleus	52.05	38.03
CDX77244	Canola	mitochondrion, nucleus	15.2	24.53
CDX99294	Canola	nucleus	14.62	24.15
CDY16501	Canola	nucleus	15.2	23.85
CDX92291	Canola	nucleus, plastid	13.45	21.7
Solyc08g068540.2.1	Tomato	nucleus	23.68	16.23
Solyc07g054630.2.1	Tomato	nucleus	25.44	15.05
PGSC0003DMT400047299	Potato	nucleus	19.01	12.24

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	GO:A0A078G0N6	UniProt:A0A078G0N6	InterPro:B3_DNA-bd	EnsemblPlants:CDY18562
ProteinID:CDY18562	ProteinID:CDY18562.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00005597001	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31920
PANTHER:PTHR31920:SF22	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EEB146	SEG:seg	:

Description

BnaA01g26330DBnaA01g26330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0N6]

Coordinates

chrLK032086:-:583857..586915

Molecular Weight (calculated)

39559.8 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.571

Length

342 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNNKI WFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH
101: SEINYHSTGL MDSAHNHFKR ARLFEDLEDE DVEVVHPSSL YPLQHPETTG HANKGHTSSA IQSFFAEPVK AEETTPTPKV PKKRGRKKKN ADPEEINSSA
201: PRDDDPENRS KFYESASARK RTVTAEERER AINAAKTFEP TNPFFRVVLR PSYLYRGCIM YLPSGFAEKY LSGISGFIKV QLGEKQWPVR CLYKAGRAKF
301: SQGWYEFTLE NNLGEGDVCV FELLRTRDFV LKVTAFRVNE YV

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.