CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22996	Canola	nucleus	82.98	83.49
CDX95476	Canola	nucleus	77.51	74.34
CDX99291	Canola	nucleus	75.68	71.97
CDY18562	Canola	nucleus	74.77	71.93
CDX92293	Canola	nucleus	75.38	71.68
CDY68372	Canola	nucleus	35.26	69.05
AT3G18990.2	Thale cress	nucleus	72.34	63.98
CDY29348	Canola	nucleus	38.3	57.01
CDY59239	Canola	nucleus	38.3	57.01
CDY16502	Canola	nucleus	37.69	55.11
KRH24554	Soybean	nucleus	53.19	39.68
KRH29559	Soybean	nucleus	51.67	39.44
KRG89212	Soybean	nucleus	51.37	38.85
VIT_03s0063g01450.t01	Wine grape	nucleus	41.34	38.31
KRH49567	Soybean	mitochondrion, nucleus	50.76	35.68
CDX99294	Canola	nucleus	15.2	24.15
CDX77244	Canola	mitochondrion, nucleus	15.5	24.06
CDY16501	Canola	nucleus	15.5	23.39
CDX92291	Canola	nucleus, plastid	13.37	20.75
Solyc08g068540.2.1	Tomato	nucleus	24.92	16.43
Solyc07g054630.2.1	Tomato	nucleus	26.44	15.05
PGSC0003DMT400047299	Potato	nucleus	20.36	12.62

Protein Annotations

EnsemblPlants:CDX82319	EnsemblPlantsGene:GSBRNA2T00137434001	Gene3D:2.40.330.10	GO:A0A078D251	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR31920	PANTHER:PTHR31920:SF22	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX82319	ProteinID:CDX82319.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0000233D44	MapMan:15.5.5.2	:

Description

BnaA03g35020D

Coordinates

chrLK031828:+:569847..572277

Molecular Weight (calculated)

38060.0 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.599

Length

329 amino acids

Sequence
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSRF KDELSVAVAL TVPDGHVWRV GLRKADNNNK IWFQDGWQEF VDRYSIRIGY LLIFRYEGNS AFSVCIYNLP
101: QSEINYHSTG LMDSASHNNH FKRPRLFEDL EDEDAETLHT TASAIQSFFT GPVKPEEATP TQTSKVPKKR GRKKKNADHP EEVNSSAPRD DDPESRSKFY
201: ESASARKRTV NAEERERAVN AAKTFEPTNP FFRVVLRPSY LYRGCIMYLP SGFAEKYLSG ISGFIKVQLG EKQWPVRCLY KAGRAKFSQG WYEFTVENNL
301: GEGDVCVFEL LRTRDFVLKV TAYRVNEYV

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.