Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16502 | Canola | nucleus | 73.01 | 73.33 |
| Bra014192.1-P | Field mustard | nucleus | 68.14 | 72.3 |
| Bra032286.1-P | Field mustard | nucleus | 69.03 | 70.91 |
| CDY29348 | Canola | nucleus | 69.03 | 70.59 |
| CDY59239 | Canola | nucleus | 69.03 | 70.59 |
| AT3G18990.2 | Thale cress | nucleus | 57.96 | 35.22 |
| KRG89212 | Soybean | nucleus | 50.0 | 25.98 |
| KRH24554 | Soybean | nucleus | 49.56 | 25.4 |
| KRH29559 | Soybean | nucleus | 48.23 | 25.29 |
| KRH49567 | Soybean | mitochondrion, nucleus | 50.0 | 24.15 |
| VIT_03s0063g01450.t01 | Wine grape | nucleus | 34.07 | 21.69 |
| AT1G49475.1 | Thale cress | mitochondrion, nucleus | 8.85 | 10.53 |
| PGSC0003DMT400047299 | Potato | nucleus | 20.8 | 8.85 |
| Solyc08g068540.2.1 | Tomato | nucleus | 19.03 | 8.62 |
| Solyc07g054630.2.1 | Tomato | nucleus | 21.24 | 8.3 |
| AT3G18960.1 | Thale cress | nucleus | 7.52 | 8.13 |
| AT4G01580.1 | Thale cress | mitochondrion | 5.75 | 6.84 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | EntrezGene:841372 | ProteinID:AAD43153.1 | ProteinID:AEE32434.1 | ProteinID:ANM59711.1 |
| ProteinID:ANM59712.1 | ArrayExpress:AT1G49480 | EnsemblPlantsGene:AT1G49480 | RefSeq:AT1G49480 | TAIR:AT1G49480 | RefSeq:AT1G49480-TAIR-G |
| EnsemblPlants:AT1G49480.2 | EMBL:AY042868 | InterPro:B3_DNA-bd | EMBL:BT015682 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0034613 | InterPro:IPR003340 | InterPro:IPR015300 | RefSeq:NP_001322051.1 |
| RefSeq:NP_001322052.1 | RefSeq:NP_564547.1 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31920 | PANTHER:PTHR31920:SF22 |
| UniProt:Q9XIB5 | Symbol:RTV1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI00000A1549 | SEG:seg |
Description
REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
Coordinates
chr1:-:18314117..18316861
Molecular Weight (calculated)
25851.5 Da
IEP (calculated)
9.529
GRAVY (calculated)
-0.757
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.