Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77244 | Canola | mitochondrion, nucleus | 56.32 | 50.47 |
| CDY16501 | Canola | nucleus | 57.37 | 50.0 |
| Bra014191.1-P | Field mustard | mitochondrion, nucleus | 52.63 | 47.17 |
| AT4G01580.1 | Thale cress | mitochondrion | 36.84 | 36.84 |
| AT3G18960.1 | Thale cress | nucleus | 36.32 | 33.01 |
| AT3G18990.2 | Thale cress | nucleus | 26.32 | 13.44 |
| AT1G49480.2 | Thale cress | nucleus | 10.53 | 8.85 |
| Solyc08g068540.2.1 | Tomato | nucleus | 22.63 | 8.62 |
| Solyc07g054630.2.1 | Tomato | nucleus | 23.16 | 7.61 |
| PGSC0003DMT400047299 | Potato | nucleus | 16.32 | 5.84 |
Protein Annotations
| MapMan:15.5.5.2 | Gene3D:2.40.330.10 | EntrezGene:841371 | ProteinID:AAD43154.1 | ProteinID:AEE32433.1 | ArrayExpress:AT1G49475 |
| EnsemblPlantsGene:AT1G49475 | RefSeq:AT1G49475 | TAIR:AT1G49475 | RefSeq:AT1G49475-TAIR-G | EnsemblPlants:AT1G49475.1 | TAIR:AT1G49475.1 |
| InterPro:B3_DNA-bd | EMBL:BX817688 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003340 | InterPro:IPR015300 | RefSeq:NP_683415.2 | PFAM:PF02362 | PO:PO:0000293 | PFscan:PS50863 |
| PANTHER:PTHR31674 | PANTHER:PTHR31674:SF1 | UniProt:Q9XIB4 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI00005DC2E5 |
| SEG:seg | : | : | : | : | : |
Description
B3 domain-containing protein At1g49475 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB4]
Coordinates
chr1:+:18312883..18314099
Molecular Weight (calculated)
21998.3 Da
IEP (calculated)
5.759
GRAVY (calculated)
-0.592
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.