Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40752 | Canola | cytosol | 75.56 | 96.05 |
| Bra028662.1-P | Field mustard | nucleus | 96.0 | 94.32 |
| CDX81094 | Canola | nucleus | 67.11 | 83.89 |
| CDY21536 | Canola | nucleus | 87.56 | 83.47 |
| CDX78335 | Canola | nucleus | 64.89 | 82.95 |
| AT5G08330.1 | Thale cress | nucleus | 86.22 | 81.17 |
| CDY16842 | Canola | nucleus | 70.67 | 73.95 |
| CDX87179 | Canola | nucleus | 69.33 | 72.56 |
| CDY45760 | Canola | nucleus | 71.56 | 66.53 |
| CDX88010 | Canola | nucleus | 72.44 | 64.43 |
| CDY46951 | Canola | nucleus | 65.78 | 64.35 |
| CDY40799 | Canola | nucleus | 65.33 | 63.91 |
| KRH36141 | Soybean | nucleus | 66.67 | 60.98 |
| Os03t0422702-00 | Rice | cytosol, plastid | 32.89 | 58.73 |
| KRG90619 | Soybean | nucleus | 62.67 | 58.26 |
| Zm00001d018530_P001 | Maize | plastid | 52.44 | 57.0 |
| Os02t0828566-01 | Rice | nucleus | 56.44 | 53.81 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 58.22 | 53.69 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 46.67 | 53.3 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 46.67 | 53.03 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 46.22 | 52.53 |
| EES07800 | Sorghum | plastid | 56.0 | 51.85 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 57.33 | 48.31 |
| CDY36943 | Canola | nucleus | 29.78 | 35.45 |
| CDY60249 | Canola | cytosol | 27.11 | 29.33 |
| CDX72856 | Canola | nucleus | 42.67 | 28.74 |
| CDX96370 | Canola | nucleus | 42.67 | 28.66 |
| CDY48964 | Canola | nucleus | 27.11 | 27.73 |
| CDY24170 | Canola | nucleus | 29.78 | 27.57 |
| CDY28577 | Canola | cytosol | 28.0 | 25.93 |
| CDY03666 | Canola | nucleus, plastid | 40.89 | 25.92 |
| CDX82193 | Canola | nucleus, plastid | 40.44 | 25.85 |
| CDY27099 | Canola | nucleus | 32.0 | 25.81 |
| CDY28576 | Canola | nucleus | 35.11 | 24.84 |
| CDX95656 | Canola | nucleus | 32.0 | 24.57 |
| CDY20065 | Canola | cytosol | 29.33 | 24.54 |
| CDX91612 | Canola | nucleus | 31.11 | 24.31 |
| CDY68276 | Canola | nucleus, plastid | 34.67 | 24.3 |
| CDY00171 | Canola | nucleus | 29.78 | 24.28 |
| CDY01754 | Canola | nucleus, plastid | 34.67 | 24.15 |
| CDY53888 | Canola | nucleus | 32.89 | 23.79 |
| CDY52403 | Canola | nucleus | 32.0 | 23.61 |
| CDY13675 | Canola | nucleus | 32.0 | 23.15 |
| CDX74756 | Canola | nucleus | 32.44 | 22.46 |
| CDY18910 | Canola | nucleus | 32.0 | 22.15 |
| CDY39914 | Canola | nucleus, plastid | 36.89 | 21.07 |
| CDY71135 | Canola | nucleus | 36.0 | 20.66 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.3 | UniProt:A0A078I1M7 | EnsemblPlants:CDY44770 | ProteinID:CDY44770 | ProteinID:CDY44770.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042752 | GO:GO:0043433 |
| EnsemblPlantsGene:GSBRNA2T00080768001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF73 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EC8535 | SEG:seg | : | : |
Description
BnaC02g01170DTranscription factor TCP21 [Source:Projected from Arabidopsis thaliana (AT5G08330) UniProtKB/Swiss-Prot;Acc:Q9FTA2]
Coordinates
chrLK032601:+:37626..38571
Molecular Weight (calculated)
23568.8 Da
IEP (calculated)
9.848
GRAVY (calculated)
-0.388
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNDGAMTN GVIINKGPLN AVKKPPTKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTASLSVSS
101: SPFALGKRVV RAEEEGESGG PGGGGELTVG HTMSGGGGGF WAVPARQDFG QVWSFAAGAT PEMLFTQQQQ AATLFVRQQQ QAVAAMGEAS AARVGNYLPG
201: HHLNLLASLS GGSPGSGRRE EDDSR
101: SPFALGKRVV RAEEEGESGG PGGGGELTVG HTMSGGGGGF WAVPARQDFG QVWSFAAGAT PEMLFTQQQQ AATLFVRQQQ QAVAAMGEAS AARVGNYLPG
201: HHLNLLASLS GGSPGSGRRE EDDSR
001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
Arabidopsis Description
TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.