Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88010 | Canola | nucleus | 97.52 | 93.28 |
| CDX87179 | Canola | nucleus | 73.14 | 82.33 |
| CDY16842 | Canola | nucleus | 73.14 | 82.33 |
| CDY40752 | Canola | cytosol | 58.68 | 80.23 |
| CDX78335 | Canola | nucleus | 55.79 | 76.7 |
| CDY46951 | Canola | nucleus | 71.07 | 74.78 |
| CDY40799 | Canola | nucleus | 71.07 | 74.78 |
| AT5G23280.1 | Thale cress | nucleus | 76.86 | 74.4 |
| CDX81094 | Canola | nucleus | 54.96 | 73.89 |
| CDY44770 | Canola | cytosol | 66.53 | 71.56 |
| Bra009338.1-P | Field mustard | nucleus | 65.7 | 67.37 |
| CDY21536 | Canola | nucleus | 64.88 | 66.53 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 67.36 | 63.92 |
| Os03t0422702-00 | Rice | cytosol, plastid | 31.41 | 60.32 |
| Zm00001d018530_P001 | Maize | plastid | 48.76 | 57.0 |
| Os02t0828566-01 | Rice | nucleus | 54.55 | 55.93 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 56.2 | 55.74 |
| EES07800 | Sorghum | plastid | 53.31 | 53.09 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 43.39 | 53.03 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 43.39 | 53.03 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 42.98 | 52.79 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 53.72 | 48.69 |
| CDY36943 | Canola | nucleus | 27.69 | 35.45 |
| CDX72856 | Canola | nucleus | 40.5 | 29.34 |
| CDX96370 | Canola | nucleus | 40.08 | 28.96 |
| CDY60249 | Canola | cytosol | 24.38 | 28.37 |
| CDY24170 | Canola | nucleus | 27.69 | 27.57 |
| CDY03666 | Canola | nucleus, plastid | 39.26 | 26.76 |
| CDX82193 | Canola | nucleus, plastid | 38.84 | 26.7 |
| CDY48964 | Canola | nucleus | 23.97 | 26.36 |
| CDY28577 | Canola | cytosol | 25.62 | 25.51 |
| CDX95656 | Canola | nucleus | 30.17 | 24.91 |
| CDY28576 | Canola | nucleus | 32.64 | 24.84 |
| CDY20065 | Canola | cytosol | 27.27 | 24.54 |
| CDY27099 | Canola | nucleus | 28.1 | 24.37 |
| CDY00171 | Canola | nucleus | 27.69 | 24.28 |
| CDY01754 | Canola | nucleus, plastid | 32.23 | 24.15 |
| CDY68276 | Canola | nucleus, plastid | 31.82 | 23.99 |
| CDY53888 | Canola | nucleus | 30.58 | 23.79 |
| CDX91612 | Canola | nucleus | 28.1 | 23.61 |
| CDY52403 | Canola | nucleus | 29.75 | 23.61 |
| CDY13675 | Canola | nucleus | 29.75 | 23.15 |
| CDX74756 | Canola | nucleus | 30.99 | 23.08 |
| CDY18910 | Canola | nucleus | 30.58 | 22.77 |
| CDY71135 | Canola | nucleus | 35.95 | 22.19 |
| CDY39914 | Canola | nucleus, plastid | 35.54 | 21.83 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.3 | UniProt:A0A078I4H3 | EnsemblPlants:CDY45760 | ProteinID:CDY45760 | ProteinID:CDY45760.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00082683001 | InterPro:IPR017887 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF7 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EDDC79 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g42220DBnaC02g42220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4H3]
Coordinates
chrLK032635:+:192162..193424
Molecular Weight (calculated)
26074.6 Da
IEP (calculated)
10.105
GRAVY (calculated)
-0.598
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNNNDGVM ISNGSLIEHQ QNQKQSSDGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA
101: SFSTAVRGSS TTISTSANCT LSSPLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ QQQQQQQQPA AALFVHQQQQ
201: QQAAMGEASA ARVGNYLPGH LNLLASLSGG APGSGRREDD QR
101: SFSTAVRGSS TTISTSANCT LSSPLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ QQQQQQQQPA AALFVHQQQQ
201: QQAAMGEASA ARVGNYLPGH LNLLASLSGG APGSGRREDD QR
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.