Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025528.1-P | Field mustard | nucleus | 96.82 | 95.09 |
| CDY60249 | Canola | cytosol | 86.36 | 91.35 |
| AT5G41030.1 | Thale cress | nucleus | 55.0 | 49.79 |
| TraesCS2D01G049400.1 | Wheat | cytosol | 15.45 | 38.64 |
| KRH30615 | Soybean | cytosol | 24.55 | 34.62 |
| CDY40752 | Canola | cytosol | 25.45 | 31.64 |
| CDX78335 | Canola | nucleus | 24.55 | 30.68 |
| TraesCS2B01G062900.1 | Wheat | plastid | 22.27 | 30.62 |
| CDY36943 | Canola | nucleus | 25.91 | 30.16 |
| CDX81094 | Canola | nucleus | 24.55 | 30.0 |
| Zm00001d025033_P001 | Maize | plastid | 22.73 | 28.41 |
| Os04t0194600-01 | Rice | plastid | 22.27 | 27.84 |
| CDY20065 | Canola | cytosol | 33.18 | 27.14 |
| CDY44770 | Canola | cytosol | 27.73 | 27.11 |
| CDY16842 | Canola | nucleus | 26.36 | 26.98 |
| CDX87179 | Canola | nucleus | 26.36 | 26.98 |
| EES10469 | Sorghum | plastid | 21.36 | 26.55 |
| CDY13675 | Canola | nucleus | 35.91 | 25.4 |
| CDY00171 | Canola | nucleus | 31.82 | 25.36 |
| CDY21536 | Canola | nucleus | 26.82 | 25.0 |
| CDY52403 | Canola | nucleus | 34.55 | 24.92 |
| CDY46951 | Canola | nucleus | 25.91 | 24.78 |
| CDY40799 | Canola | nucleus | 25.45 | 24.35 |
| CDY24170 | Canola | nucleus | 26.82 | 24.28 |
| CDY45760 | Canola | nucleus | 26.36 | 23.97 |
| CDX88010 | Canola | nucleus | 26.82 | 23.32 |
| CDY68276 | Canola | nucleus, plastid | 32.27 | 22.12 |
| CDY28576 | Canola | nucleus | 31.82 | 22.01 |
| CDY01754 | Canola | nucleus, plastid | 32.27 | 21.98 |
| CDY28577 | Canola | cytosol | 23.64 | 21.4 |
| CDY27099 | Canola | nucleus | 26.82 | 21.15 |
| CDX95656 | Canola | nucleus | 27.73 | 20.82 |
| CDX91612 | Canola | nucleus | 26.82 | 20.49 |
| CDY53888 | Canola | nucleus | 28.64 | 20.26 |
| CDX74756 | Canola | nucleus | 29.55 | 20.0 |
| CDY18910 | Canola | nucleus | 29.09 | 19.69 |
| CDX72856 | Canola | nucleus | 25.45 | 16.77 |
| CDX96370 | Canola | nucleus | 25.45 | 16.72 |
| CDY71135 | Canola | nucleus | 29.09 | 16.33 |
| CDY39914 | Canola | nucleus, plastid | 29.09 | 16.24 |
| CDX82193 | Canola | nucleus, plastid | 25.45 | 15.91 |
| CDY03666 | Canola | nucleus, plastid | 25.45 | 15.77 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078IHS7 | EnsemblPlants:CDY48964 | ProteinID:CDY48964 | ProteinID:CDY48964.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00092092001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF69 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EEC36F | SEG:seg |
Description
BnaA04g10760DBnaA04g10760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHS7]
Coordinates
chrLK032804:-:109135..109797
Molecular Weight (calculated)
24078.3 Da
IEP (calculated)
7.370
GRAVY (calculated)
-0.824
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNLLNPSE TETEVKKVLN NTVEGKRKWK QKGKEGREIQ TKSRKDRHLK VEGRGGRVRL PPLCAARIFQ LTRELGHKTD GETLQWLLRH AEPSIISATG
101: TGIKPATDSV SQPPPHAVDL NLDGGSRSQL ANGFWGNETG FGVGANPTGG GLDLNCGIGF LGFDFNGSSD MGFENNQMPQ DGVLNPLIYQ QIGQEQAKVL
201: QHHHHHPHEA QQENADKQGS
101: TGIKPATDSV SQPPPHAVDL NLDGGSRSQL ANGFWGNETG FGVGANPTGG GLDLNCGIGF LGFDFNGSSD MGFENNQMPQ DGVLNPLIYQ QIGQEQAKVL
201: QHHHHHPHEA QQENADKQGS
001: MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
Arabidopsis Description
TCP6Transcription factor TCP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLM6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.