Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60249 | Canola | cytosol | 47.33 | 55.29 |
| CDY48964 | Canola | nucleus | 49.79 | 55.0 |
| Bra025528.1-P | Field mustard | nucleus | 49.79 | 54.02 |
| TraesCS2D01G049400.1 | Wheat | cytosol | 11.93 | 32.95 |
| KRH30615 | Soybean | cytosol | 20.58 | 32.05 |
| TraesCS2B01G062900.1 | Wheat | plastid | 18.11 | 27.5 |
| AT2G37000.1 | Thale cress | nucleus, plastid | 20.58 | 26.6 |
| AT3G45150.1 | Thale cress | nucleus | 17.28 | 25.45 |
| AT3G27010.1 | Thale cress | nucleus | 32.51 | 25.16 |
| Zm00001d025033_P001 | Maize | plastid | 18.11 | 25.0 |
| Os04t0194600-01 | Rice | plastid | 18.11 | 25.0 |
| EES10469 | Sorghum | plastid | 18.11 | 24.86 |
| AT5G23280.1 | Thale cress | nucleus | 24.69 | 24.0 |
| AT5G08330.1 | Thale cress | nucleus | 23.05 | 23.43 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 27.57 | 20.62 |
| AT5G51910.1 | Thale cress | nucleus | 24.28 | 20.14 |
| AT1G35560.1 | Thale cress | nucleus, plastid | 25.1 | 17.89 |
| AT1G72010.1 | Thale cress | nucleus, plastid | 23.87 | 15.47 |
| AT2G45680.1 | Thale cress | cytosol | 22.63 | 15.45 |
| AT1G58100.1 | Thale cress | nucleus | 25.1 | 15.21 |
| AT3G47620.1 | Thale cress | nucleus | 28.81 | 14.31 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:834105 | ProteinID:AED94627.1 | ArrayExpress:AT5G41030 | EnsemblPlantsGene:AT5G41030 | RefSeq:AT5G41030 |
| TAIR:AT5G41030 | RefSeq:AT5G41030-TAIR-G | EnsemblPlants:AT5G41030.1 | TAIR:AT5G41030.1 | ProteinID:BAB09705.1 | ncoils:Coil |
| EMBL:DR750813 | EMBL:DR750814 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | RefSeq:NP_198919.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF69 |
| UniProt:Q9FLM6 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000AA408 | SEG:seg | : |
Description
TCP6Transcription factor TCP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLM6]
Coordinates
chr5:+:16428706..16429679
Molecular Weight (calculated)
27619.6 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.934
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.