Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G049400.1 | Wheat | cytosol | 15.15 | 28.41 |
| TraesCS2B01G062900.1 | Wheat | plastid | 23.03 | 23.75 |
| Os04t0194600-01 | Rice | plastid | 24.24 | 22.73 |
| Zm00001d025033_P001 | Maize | plastid | 23.03 | 21.59 |
| EES10469 | Sorghum | plastid | 22.42 | 20.9 |
| AT2G37000.1 | Thale cress | nucleus, plastid | 23.64 | 20.74 |
| AT5G08330.1 | Thale cress | nucleus | 27.88 | 19.25 |
| AT5G23280.1 | Thale cress | nucleus | 27.88 | 18.4 |
| AT5G41030.1 | Thale cress | nucleus | 25.45 | 17.28 |
| AT5G51910.1 | Thale cress | nucleus | 29.7 | 16.72 |
| AT1G35560.1 | Thale cress | nucleus, plastid | 30.91 | 14.96 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 29.09 | 14.77 |
| AT3G27010.1 | Thale cress | nucleus | 27.88 | 14.65 |
| AT2G45680.1 | Thale cress | cytosol | 29.09 | 13.48 |
| AT1G58100.1 | Thale cress | nucleus | 29.7 | 12.22 |
| AT1G72010.1 | Thale cress | nucleus, plastid | 26.06 | 11.47 |
| AT3G47620.1 | Thale cress | nucleus | 30.3 | 10.22 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:823651 | ProteinID:AEE77998.1 | ArrayExpress:AT3G45150 | EnsemblPlantsGene:AT3G45150 | RefSeq:AT3G45150 |
| TAIR:AT3G45150 | RefSeq:AT3G45150-TAIR-G | EnsemblPlants:AT3G45150.1 | TAIR:AT3G45150.1 | ProteinID:CAB72153.1 | EMBL:DR751441 |
| EMBL:DR751442 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | RefSeq:NP_190101.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF69 | UniProt:Q9M1U4 | Symbol:TCP16 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000009D5AE |
| SEG:seg | : | : | : | : | : |
Description
TCP16Transcription factor TCP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1U4]
Coordinates
chr3:+:16531179..16531676
Molecular Weight (calculated)
17998.8 Da
IEP (calculated)
9.632
GRAVY (calculated)
-0.657
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKNGINNS QKARRTPKDR HLKIGGRDRR IRIPPSVAPQ LFRLTKELGF KTDGETVSWL LQNAEPAIFA ATGHGVTTTS NEDIQPNRNF PSYTFNGDNI
101: SNNVFPCTVV NTGHRQMVFP VSTMTDHAPS TNYSTISDNY NSTFNGNATA SDTTSAATTT ATTTV
101: SNNVFPCTVV NTGHRQMVFP VSTMTDHAPS TNYSTISDNY NSTFNGNATA SDTTSAATTT ATTTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.