Factsheet for AT1G35560.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065190.1.1	Tomato	nucleus	39.0	40.92
PGSC0003DMT400067150	Potato	nucleus, plastid	39.0	40.67
AT5G23280.1	Thale cress	nucleus	27.86	38.0
Solyc11g020670.1.1	Tomato	nucleus	41.35	37.7
AT5G08330.1	Thale cress	nucleus	25.51	36.4
PGSC0003DMT400023981	Potato	nucleus	41.06	35.99
AT1G69690.1	Thale cress	nucleus, plastid	32.55	34.15
AT2G37000.1	Thale cress	nucleus, plastid	17.89	32.45
AT1G58100.1	Thale cress	nucleus	38.12	32.42
AT3G45150.1	Thale cress	nucleus	14.96	30.91
AT5G51910.1	Thale cress	nucleus	26.39	30.72
AT3G27010.1	Thale cress	nucleus	24.63	26.75
AT1G72010.1	Thale cress	nucleus, plastid	29.33	26.67
GSMUA_Achr6P17840_001	Banana	cytosol	30.21	26.55
GSMUA_Achr10P...	Banana	nucleus	30.5	25.74
AT2G45680.1	Thale cress	cytosol	26.69	25.56
AT5G41030.1	Thale cress	nucleus	17.89	25.1
AT3G47620.1	Thale cress	nucleus	30.5	21.27

Protein Annotations

MapMan:15.5.19	EntrezGene:840452	ProteinID:AAF79358.1	ProteinID:AEE31811.1	ArrayExpress:AT1G35560	EnsemblPlantsGene:AT1G35560
RefSeq:AT1G35560	TAIR:AT1G35560	RefSeq:AT1G35560-TAIR-G	EnsemblPlants:AT1G35560.1	TAIR:AT1G35560.1	EMBL:AY056429
EMBL:AY081714	Unigene:At.26325	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0048510	InterPro:IPR017887	RefSeq:NP_174789.1	PFAM:PF03634	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0004507	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009030	PO:PO:0009031	PO:PO:0009046	PO:PO:0009047	PO:PO:0020030
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1
UniProt:Q9LQF0	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00000A6D69	SEG:seg	:

Description

TCP23Transcription factor TCP23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQF0]

Coordinates

chr1:-:13115824..13117235

Molecular Weight (calculated)

35952.1 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.561

Length

341 amino acids

Sequence
(BLAST)

001: MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ
101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK
201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.