Factsheet for Solyc11g020670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023981	Potato	nucleus	91.18	87.66
Solyc06g065190.1.1	Tomato	nucleus	57.75	66.46
Solyc02g094290.1.1	Tomato	cytosol	15.51	51.33
AT1G35560.1	Thale cress	nucleus, plastid	37.7	41.35
Solyc01g008230.2.1	Tomato	nucleus	23.8	35.74
Solyc04g009180.1.1	Tomato	nucleus	24.33	34.21
Solyc01g103780.2.1	Tomato	nucleus	37.7	31.69
Solyc09g008030.1.1	Tomato	plastid	16.84	31.34
Solyc02g068200.1.1	Tomato	nucleus	21.93	30.15
Solyc05g007420.1.1	Tomato	nucleus	28.34	27.68
Solyc03g116320.2.1	Tomato	nucleus	29.14	26.65
Solyc06g070900.2.1	Tomato	nucleus	29.14	26.2
GSMUA_Achr6P17840_001	Banana	cytosol	27.01	26.03
Solyc03g006800.1.1	Tomato	nucleus	22.19	25.46
GSMUA_Achr10P...	Banana	nucleus	27.27	25.25
Solyc08g080150.1.1	Tomato	nucleus	19.25	19.46

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:K4D719
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	EnsemblPlantsGene:Solyc11g020670.1	EnsemblPlants:Solyc11g020670.1.1
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002769518	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:11820759..11821883

Molecular Weight (calculated)

39924.2 Da

IEP (calculated)

8.045

GRAVY (calculated)

-0.730

Length

374 amino acids

Sequence
(BLAST)

001: MEFMEPHRKK LGDASNHHQH NQEETPSSLQ LISPHQSQRD PSTPGSNHPH GPFMGSISMQ SISPPSTNSS TPNNNTISTL KVAKKPSKDR HTKVDGRGRR
101: IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSTRS SGTTISAPPS KSAPLFIHGA SASASAAMLG FHHHLSTANT
201: GFIQDPDENY MKKRFREDTT TSGATSPSPD KPGSDSSKPG SNLIPGQAMW AVAPAGGNVG NGFWMLPVSG GTGSTAVSVG AGQSDHQLWQ YKSSRIGGLE
301: FPGGGRFSPV QLGSMVLQQS HPVQQLGSNM GMLNAYNNNN NNSRVDLGMN LEHHNQTQHQ DSDSGDENHN DSQS

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.