Factsheet for Solyc06g065190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067150	Potato	nucleus, plastid	97.23	96.64
Solyc11g020670.1.1	Tomato	nucleus	66.46	57.75
Solyc02g094290.1.1	Tomato	cytosol	17.85	51.33
AT1G35560.1	Thale cress	nucleus, plastid	40.92	39.0
Solyc01g008230.2.1	Tomato	nucleus	29.85	38.96
Solyc04g009180.1.1	Tomato	nucleus	30.77	37.59
Solyc09g008030.1.1	Tomato	plastid	20.62	33.33
Solyc02g068200.1.1	Tomato	nucleus	25.54	30.51
Solyc05g007420.1.1	Tomato	nucleus	32.92	27.94
Solyc01g103780.2.1	Tomato	nucleus	37.85	27.64
Solyc03g116320.2.1	Tomato	nucleus	32.92	26.16
Solyc06g070900.2.1	Tomato	nucleus	32.62	25.48
GSMUA_Achr6P17840_001	Banana	cytosol	29.85	25.0
Solyc03g006800.1.1	Tomato	nucleus	24.92	24.85
GSMUA_Achr10P...	Banana	nucleus	28.0	22.52
Solyc08g080150.1.1	Tomato	nucleus	21.54	18.92

Protein Annotations

MapMan:15.5.19	UniProt:G3BGV3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:GQ496331
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	EnsemblPlantsGene:Solyc06g065190.1
EnsemblPlants:Solyc06g065190.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00022A26A8	SEG:seg	:

Description

TCP transcription factor 13 [Source:UniProtKB/TrEMBL;Acc:G3BGV3]

Coordinates

chr6:-:40647316..40648293

Molecular Weight (calculated)

34720.3 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.757

Length

325 amino acids

Sequence
(BLAST)

001: MEFRESNSKN NQDGGSNSNN NSNENNSNVI STKIVKKPSK DRHTKVDGRG RRIRMPALCA ARVFQLTKEL GHKSDGETIE WLLQQAEPSI IAATGTGTIP
101: ANFSTLNVSL RSSGTTISAP PSKSAPLFIH GGAATMLGFH HQIPGNSFGQ DPDENFMKKR YREDTTAAST SPSSSSAKPE RTGVQGHEPD QESKPGSSNP
201: SSYIPTPAMW AVGPAAGNVG NTFWMLPGTS STMQRIGGFE LPGGGRFSPV QLGSMFLQQP QPVQQLGLGV TETNMGMLAS MNAYNSSSSR GSGIDLGMNL
301: EQHHHHQNQP QGSDSGDENH KDSQS

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.