Factsheet for Solyc06g070900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083148	Potato	nucleus	94.23	95.61
Solyc03g116320.2.1	Tomato	nucleus	72.84	74.08
Solyc02g094290.1.1	Tomato	cytosol	16.11	59.29
GSMUA_Achr6P02720_001	Banana	nucleus	38.22	58.89
GSMUA_Achr4P00500_001	Banana	nucleus	38.22	58.46
GSMUA_Achr7P20990_001	Banana	nucleus	36.54	56.72
Os06t0226700-01	Rice	nucleus	45.67	49.1
TraesCS6D01G285600.1	Wheat	nucleus	46.88	48.63
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	45.19	48.33
EES07255	Sorghum	nucleus	46.15	48.24
TraesCS6A01G306500.1	Wheat	nucleus	46.63	48.02
HORVU6Hr1G075650.1	Barley	nucleus	46.39	48.01
TraesCS6B01G334900.1	Wheat	nucleus	46.39	48.01
GSMUA_Achr7P17990_001	Banana	nucleus	38.7	47.92
Os02t0747400-01	Rice	nucleus	47.12	47.8
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	43.51	47.76
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	45.43	47.25
EER88112	Sorghum	nucleus	44.47	46.95
TraesCS7B01G091900.1	Wheat	cytosol, nucleus, peroxisome	40.87	45.7
Zm00001d044836_P001	Maize	nucleus	38.94	45.38
TraesCS7D01G187600.1	Wheat	cytosol	43.51	45.25
HORVU7Hr1G038130.1	Barley	nucleus	42.79	44.5
Solyc05g007420.1.1	Tomato	nucleus	37.5	40.73
Solyc01g008230.2.1	Tomato	nucleus	23.32	38.96
Solyc02g068200.1.1	Tomato	nucleus	22.6	34.56
Solyc04g009180.1.1	Tomato	nucleus	21.39	33.46
Solyc09g008030.1.1	Tomato	plastid	16.11	33.33
Solyc06g065190.1.1	Tomato	nucleus	25.48	32.62
Solyc11g020670.1.1	Tomato	nucleus	26.2	29.14
Solyc01g103780.2.1	Tomato	nucleus	28.61	26.74
Solyc03g006800.1.1	Tomato	nucleus	19.71	25.15
Solyc08g080150.1.1	Tomato	nucleus	20.91	23.51

Protein Annotations

MapMan:15.5.19	ncoils:Coil	UniProt:G3BGV7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EMBL:GQ496335	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF40
EnsemblPlantsGene:Solyc06g070900.2	EnsemblPlants:Solyc06g070900.2.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00022A26AC	SEG:seg

Description

TCP transcription factor 17 [Source:UniProtKB/TrEMBL;Acc:G3BGV7]

Coordinates

chr6:+:43532069..43533814

Molecular Weight (calculated)

45265.0 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.795

Length

416 amino acids

Sequence
(BLAST)

001: MEGGGGDDHL HHHHHNHQHH QHHQQYRPNN FPFQLLEKKE DEPCSSSSAA NNINYPSLAI SPSDTNTNIN PNSNDLQITV ASTETAKKPA PKRTSTKDRH
101: TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSMSVPSQL RSSYFNPNFS LSQRRSLFQG
201: IGLSSDRSAT TTLLNFQTGN SNLHQFQAKQ EMRDNSLDLT ETSIEESLSR KRRQDLDLQQ EQQQNQQQQN EQQMGSYLLQ SSSSGTMPTS HSSIPANFWM
301: LTNNNTQVLG GDPVWTFPSV NNSGAAAAAL YRSTMSSGLH FMNFPTPVAL LPTQQFGAGS NGSTLAGEGQ LGMVTGLNPY RPCSGVSESQ ASGSHSHHGG
401: GGGGDDRHDS TSHHNS

Best Arabidopsis Sequence Match ( AT3G47620.1 )
(BLAST)

001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD

Arabidopsis Description

TCP14Transcription factor TCP14 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.