Factsheet for PGSC0003DMT400083148

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g070900.2.1	Tomato	nucleus	95.61	94.23
PGSC0003DMT400001613	Potato	nucleus	74.63	73.91
GSMUA_Achr4P00500_001	Banana	nucleus	40.24	60.66
GSMUA_Achr6P02720_001	Banana	nucleus	38.78	58.89
GSMUA_Achr7P20990_001	Banana	nucleus	37.56	57.46
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	46.34	48.84
Os06t0226700-01	Rice	nucleus	46.1	48.84
EES07255	Sorghum	nucleus	47.07	48.49
GSMUA_Achr7P17990_001	Banana	nucleus	39.51	48.21
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	44.39	48.02
TraesCS6B01G334900.1	Wheat	nucleus	47.07	48.01
TraesCS6D01G285600.1	Wheat	nucleus	46.83	47.88
TraesCS6A01G306500.1	Wheat	nucleus	46.83	47.52
HORVU6Hr1G075650.1	Barley	nucleus	46.59	47.51
EER88112	Sorghum	nucleus	45.61	47.46
Os02t0747400-01	Rice	nucleus	47.32	47.32
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	46.1	47.25
TraesCS7B01G091900.1	Wheat	cytosol, nucleus, peroxisome	41.71	45.97
Zm00001d044836_P001	Maize	nucleus	39.51	45.38
TraesCS7D01G187600.1	Wheat	cytosol	43.17	44.25
HORVU7Hr1G038130.1	Barley	nucleus	42.93	44.0
PGSC0003DMT400008728	Potato	nucleus	37.8	41.78
PGSC0003DMT400052203	Potato	nucleus	22.68	40.09
PGSC0003DMT400090661	Potato	nucleus	23.41	34.41
PGSC0003DMT400055541	Potato	plastid	16.83	34.33
PGSC0003DMT400067150	Potato	nucleus, plastid	26.34	33.03
PGSC0003DMT400023981	Potato	nucleus	27.56	29.05
PGSC0003DMT400094424	Potato	cytosol	16.1	26.94
PGSC0003DMT400088049	Potato	cytosol	16.59	25.19
PGSC0003DMT400064164	Potato	nucleus	32.68	25.09
PGSC0003DMT400058534	Potato	nucleus	21.46	23.53
PGSC0003DMT400062327	Potato	nucleus	20.73	23.22
PGSC0003DMT400095626	Potato	plastid	15.85	23.21
PGSC0003DMT400042166	Potato	cytosol	23.9	21.88

Protein Annotations

EntrezGene:102587309	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1D6K8	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400033078	PGSC:PGSC0003DMG400033078	EnsemblPlants:PGSC0003DMT400083148	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF40	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295C312	RefSeq:XP_006354786.1
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400033078]

Coordinates

chr6:+:51736929..51738990

Molecular Weight (calculated)

44479.1 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.781

Length

410 amino acids

Sequence
(BLAST)

001: MEGGGGDDHH HHHNHQHHQH HQQYRPNNFP FQLLEKKEDE PCSSSSAANN INYPSLAISP SDTNTNINPN SNDLQITVAS TDTAKKPVPK RTSTKDRHTK
101: VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS SYFNPNFSLS QRRSLFQGIG
201: LSSDRSATTL LNFQTGNSNP SSLHQFQAKQ EMRDNSLDLS ETSIEESLSR KRRHDLDLQQ QQEQNEQQMG SYLLQSSSSG TMPATHSSIP ANFWMLTNNN
301: NTQVLGGDPV WTFPSVNNSA AALYRSTMSS GLHFMNFPTP VALLPTQQFG GGGGGGGGNG STLAGEGQLG MVTGLNPYRP CSGVSESQAS GSHSHHGGDD
401: RHDSTSHHNS

Best Arabidopsis Sequence Match ( AT3G47620.1 )
(BLAST)

001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD

Arabidopsis Description

TCP14Transcription factor TCP14 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.