Factsheet for PGSC0003DMT400067150

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065190.1.1	Tomato	nucleus	96.64	97.23
PGSC0003DMT400023981	Potato	nucleus	69.72	58.61
AT1G35560.1	Thale cress	nucleus, plastid	40.67	39.0
PGSC0003DMT400055541	Potato	plastid	20.8	33.83
PGSC0003DMT400052203	Potato	nucleus	23.85	33.62
PGSC0003DMT400064164	Potato	nucleus	49.24	30.15
PGSC0003DMT400090661	Potato	nucleus	25.38	29.75
PGSC0003DMT400008728	Potato	nucleus	32.72	28.84
PGSC0003DMT400094424	Potato	cytosol	19.88	26.53
PGSC0003DMT400083148	Potato	nucleus	33.03	26.34
PGSC0003DMT400001613	Potato	nucleus	32.42	25.6
GSMUA_Achr6P17840_001	Banana	cytosol	29.66	25.0
PGSC0003DMT400088049	Potato	cytosol	20.49	24.81
GSMUA_Achr10P...	Banana	nucleus	27.83	22.52
PGSC0003DMT400062327	Potato	nucleus	24.16	21.58
PGSC0003DMT400042166	Potato	cytosol	29.36	21.43
PGSC0003DMT400095626	Potato	plastid	17.43	20.36
PGSC0003DMT400058534	Potato	nucleus	21.1	18.45

Protein Annotations

EntrezGene:102589240	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1CGS5	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400026105	PGSC:PGSC0003DMG400026105	EnsemblPlants:PGSC0003DMT400067150	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002965E39	RefSeq:XP_006353608.1
SEG:seg	:	:	:	:	:

Description

TCP family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026105]

Coordinates

chr6:+:46681710..46683336

Molecular Weight (calculated)

35027.6 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.793

Length

327 amino acids

Sequence
(BLAST)

001: MEFRESNSKN NQDGGSNSNN NNNNNSNENN NNAISTKVVK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL TKELGHKSDG ETIEWLLQQA EPSIIAATGT
101: GTIPANFSTL NVSLRSSGTT ISAPPSKSAP LFIHGGATTM LGFHHQIPGN SFGQDPDENF MKKRYREDTT AATTSPSSSS AKPERTGVQG HEPDQESKPG
201: SLNPSSYIPA PAMWAVGPAA GNVGNTFWML PGTSSTMQRI GGFELPGGGR FSPVQLGSMF LQQPQPVQQL GLGVTETNMG MLASMNAYNS SSRGSGIDLG
301: MNLEQHHHHQ NQPQGSDSGD ENHKDSQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.